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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_004500503.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family | bHLH | ||||||||
| Protein Properties | Length: 262aa MW: 29405.3 Da PI: 8.4844 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 44.5 | 2.8e-14 | 73 | 119 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+++E+rRRdriN+ +++Lr+l+Pk+ K++Ka+ L +++++k+L
XP_004500503.1 73 KSHSQAEKRRRDRINTQLANLRKLIPKS-----DKMDKAALLGSVIDHVKDL 119
79*************************8.....7****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.218 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 5.37E-13 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.1E-12 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.0E-15 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 9.12E-10 | 73 | 122 | No hit | No description |
| SMART | SM00353 | 1.5E-11 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd04873 | 6.07E-4 | 169 | 204 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 262 aa Download sequence Send to blast |
MENYYDSCEW QHLSTKFPLP PVTVSVPHNN NNNNNNNNIS DSSSASFQYD ELIHSWNLPI 60 EGTAEDRAAT ASKSHSQAEK RRRDRINTQL ANLRKLIPKS DKMDKAALLG SVIDHVKDLK 120 RKAMDISRVI TVPTEIDEVS IDYNHVEDEI CTNKMNKFKD NNNIVIKASV CCDDRPELFT 180 ELIQVLKGLR LTAVKADIAS VGGRIKSILV LCSKDSEENV CINTLKQSLK SAVSKIASSS 240 SISSNCPTRS KRQRFFLPSH FI |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_004500503.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004500503.1 | 0.0 | transcription factor bHLH51 | ||||
| TrEMBL | A0A1S2Y8F9 | 0.0 | A0A1S2Y8F9_CICAR; transcription factor bHLH51 | ||||
| STRING | XP_004500503.1 | 0.0 | (Cicer arietinum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5796 | 33 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 9e-47 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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