PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500369.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 895aa    MW: 99285 Da    PI: 8.0914
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.2e-19340439198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++
  XP_004500369.1 340 FEKVLSASDAGRIGRLVLPKACAEAYfpPISHSEGLPLRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMDLRAGDTVTFSRID-PGEK 432
                     99**************************555556667***************9989999999***9.********************776.5555 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_004500369.1 433 LVMGFRK 439
                     5655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-30336448IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-24338439No hitNo description
SuperFamilySSF1019362.35E-21338442IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-16340439IPR003340B3 DNA binding domain
SMARTSM010193.4E-23340440IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771340440IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149604654IPR011124Zinc finger, CW-type
PfamPF074964.3E-11609651IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MGSDIGIVNG SCVHEWKKGW PLRSGGFVQL CFKCGFMEEW KCDIMDSLSA FENTVFCNKF  60
HRQQTGWREC NFCNKPIHCG CVVSRSLFEY LDFGGIGCVS CVNSPQLNMM RNTENPNWSV  120
SLTQNNARDM HSAHFDGRMF VGNNVDEGKL MQLCRVVEAS ESIRSNHPPR DGVISCNGKN  180
NQEVKHSFRE GDAGFSNTMK PSVQSLTFAT LENNLPTWEI KNMHESNVKP SLNMCLGNPS  240
GSNFFPPSTG ENIEGRLEGK ITPPFHQGPR SRPILPKLLK TGLTMNVETE KGMVSQSRIA  300
RPPADGRGKS QLLPRYWPRI TDQELERLSG DLKSTVVPLF EKVLSASDAG RIGRLVLPKA  360
CAEAYFPPIS HSEGLPLRVQ DVKGNEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMDLRAGD  420
TVTFSRIDPG EKLVMGFRKA TNSIDAQDAS TSAHSNGISA KGATFSGGPE NLPSESNCAD  480
LLRPTKGNGE LHLNGHPEPM HLGTGAASLL KTENGDMTNN NSLDQKISAL EKKRTRNIGL  540
KSKRLIIGND DAMELTLTWE EAQDLLRPPP SVKPSIVMIE DQVFEEYDEP PVFGKRTIFS  600
GSSSGGKEQW AQCDDCSKWR KLPVDVLLPP KWSCSENVWD TSRSSCSAPD ELSPRELENL  660
LKTSKDFKKR RIVENSKLIQ EHEPSGLDAL ASVAVLGENL IDPADSSAGA TTKHPRHRPG  720
CSCIVCIQPP SGKGRHKPTC TCNVCTTVKR RFKTLMLRKK KRQSEREADA AAKKDLIRKR  780
DESDTNGASR HKAKSSFEKE GGLNRGKAEV GESSAGQIDL NCHPNREDSQ VDNNAKLSMS  840
SHHLENMNQN GGLTQSNGES KRNLSDERCI ASIVWNKERR DEVYKNSNES QNNMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-673184472131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1748759KRRFKTLMLRKK
2748761KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500368.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_004500369.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_012571339.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_027190600.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A1S2Y6V30.0A0A1S2Y6V3_CICAR; B3 domain-containing transcription repressor VAL1
STRINGXP_004500368.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2