PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 631aa MW: 69978.2 Da PI: 5.2304 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9.2e-06 | 270 | 290 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_004500271.1 270 PCPEFRK-GSCSKGDGCEYAHG 290 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.1E-12 | 66 | 185 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.5E-7 | 71 | 142 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.87E-12 | 71 | 183 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.708 | 75 | 184 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.7 | 75 | 105 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 3.10E-11 | 77 | 148 | No hit | No description |
PROSITE profile | PS50088 | 10.766 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0016 | 110 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 0.025 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.727 | 270 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 298 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 36 | 300 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MCSGSSPKPS PSGLIEEHEY ERQEELHQKV SALLEFSATD DLMAFKDAVE KDDHGVDEVG 60 LWYGRKIGSK EMSYEERTPL MIAALFGSKG VLSYILGTGR VHVNRRCGSD GATALHCAVF 120 GCSANSPEVI KLLLDASADV SSVDANGNRS SDLIDSVSNS IFGSRKRILQ AILEGTDDVD 180 VVDDDDYFKE EKQQPNAGTP RIEKKDYPID LSLPDIKNGI YSSDEFRMFS FKVKTCSRAY 240 SHDWTECPFV HPGENARRRD PKKYHYTCVP CPEFRKGSCS KGDGCEYAHG IFECWLHPAQ 300 YRTRLCKDET ECTRRVCFFA HKPEELRPLY ASTGSALPSP RSVDPYTLNS PSSLIQRAST 360 PPLTPSAASS PMNGTMLWQT QLHSAAVPTL QMPRSRLKTS LNVRDTDLDM ELLELENRLM 420 RKLMMEEMAA GISTPSKWQN SMPNSPSYPV SLTDHMGESN RFSGVNPTNL EDIFASHFQS 480 PNGMQNVNQQ LWGYPSDVTT SNRIGSPPFM ADPSMNPRYA AFSKRSQSFI ERGVASFNSE 540 LPSVTSVAAE PSSTFSSWGS SNGKLDWSIC GDELNKMRKS YSFAFQNRNS STSTMAATAV 600 PPNDGEPDVS WVNSLVKDAP TMEYDQCCVE D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500271.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500271.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Refseq | XP_027190021.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1S2Y6M8 | 0.0 | A0A1S2Y6M8_CICAR; zinc finger CCCH domain-containing protein 66 | ||||
STRING | XP_004500271.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-169 | C3H family protein |