PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500264.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 420aa    MW: 47934.5 Da    PI: 9.2723
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-18131177148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
   XP_004500264.1 131 KGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLE-GRAGKQCRERWHNHL 177
                      799*****************************.*************97 PP
2Myb_DNA-binding48.71.7e-15183225145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv+ + + G++ W+ Ia++++ gRt++ +k++w+
   XP_004500264.1 183 KDSWSEEEERILVESHGKIGNR-WAEIAKKIP-GRTENAIKNHWN 225
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.532126181IPR017930Myb domain
SuperFamilySSF466893.09E-30128224IPR009057Homeodomain-like
SMARTSM007176.0E-17130179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-28132185IPR009057Homeodomain-like
PfamPF139211.9E-20134191No hitNo description
CDDcd001671.72E-15134177No hitNo description
PROSITE profilePS5129419.123182232IPR017930Myb domain
SMARTSM007173.1E-15182230IPR001005SANT/Myb domain
CDDcd001673.30E-11185228No hitNo description
Gene3DG3DSA:1.10.10.601.3E-19186230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKTFGVRVGG GDMKITHHSS IGPPLTAIDR FLWSQHNHFP QKKHQQNVDD GNFCSSNCSN  60
ASTYCFMWPN NVMTQEANFV DHLMANEDMM NWSNQIPSLC VEKEDIINGL GKGGKGVGRR  120
PKKVSNLSLI KGQWTDEEDR KLLKLVKQHG VRKWSQIAEK LEGRAGKQCR ERWHNHLRPD  180
IKKDSWSEEE ERILVESHGK IGNRWAEIAK KIPGRTENAI KNHWNATKRR QNSRRKNKRP  240
QTTNGKPQSS ILQDYIKTLS TQTNNTTKSN FITPTNTTPS SSTSAISDEP SQNYQSNLVF  300
ENSSSPLIAE SYDDELLFMQ QLFKTNNSNQ ILTDHVNENG FVHSNYPNKT NSHNNSNNNN  360
MYLSTSTSSN PMMMNYLNSD HYVSPMMNNV ELQLGSMNCS SNGKREMDLL DLVSSTHFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-4612023147158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-4612023147158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227238KRRQNSRRKNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337662e-51CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735102e-51CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500264.10.0transcription factor MYB64-like
TrEMBLA0A1S2Y6S10.0A0A1S2Y6S1_CICAR; transcription factor MYB64-like
STRINGXP_004500264.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.19e-65myb domain protein 119