PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500230.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 343aa    MW: 39553.8 Da    PI: 8.8124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-085296345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + + ++   +W+++a++++ g+t  ++ + + 
   XP_004500230.1 52 KWTQAENKLFENALAVYDKDtpdRWHKVAEMIP-GKTVVDVLNQYK 96
                     8********************************.******999886 PP
2Myb_DNA-binding44.43.7e-14159203347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_004500230.1 159 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 203
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-114699IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-44897IPR009057Homeodomain-like
PROSITE profilePS512938.56548103IPR017884SANT domain
SMARTSM007171.4E-949101IPR001005SANT/Myb domain
PfamPF002495.9E-75297IPR001005SANT/Myb domain
CDDcd001673.41E-75298No hitNo description
PROSITE profilePS5129420.486152208IPR017930Myb domain
SuperFamilySSF466899.33E-17154207IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17155207IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-12156203IPR009057Homeodomain-like
SMARTSM007175.3E-13156206IPR001005SANT/Myb domain
CDDcd001671.72E-10159204No hitNo description
PfamPF002491.3E-12159203IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MKWEMEILSP NPNHNLNPNL NLNHHAPFVQ NSNNNTTNWF LEDDSYSRNS TKWTQAENKL  60
FENALAVYDK DTPDRWHKVA EMIPGKTVVD VLNQYKELEV DVCNIEAGLI PIPGYTTTTN  120
SPFTLDWVNS SGYDGFRGIT SKRGSSGRSP DQERKKGVPW TEEEHKLFLL GLKKYGKGDW  180
RNISRNFVIT RTPTQVASHA QKYFIRQLSG GKDKRRASIH DITTVNLTET TRTTISSEEI  240
KRSTSPHHHS MNMNKYSNAN TISEVHFHWN NNNNNQPAMT GFNNHAHEQV FMSPYNGVNN  300
SYEFKMQGQN MHRNPLHENS YLVPQTQNMV FQMQSSQQHY SHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-15531181176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500230.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-116DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S2Y6M50.0A0A1S2Y6M5_CICAR; transcription factor DIVARICATA-like
STRINGXP_004500230.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-81Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]