PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500187.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 284aa    MW: 33046.3 Da    PI: 10.5121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14201001298
                     HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++ + +p++f++++  g     s  + ++ ++g +W+v+   +k  g+++l+kGWk+F +   L++g  vvF+++g s+f   v +++
  XP_004500187.1  20 NLQKIKIPNNFTRSYgfG----LSNPVFIMLPDGTKWKVYW--KKINGEIWLEKGWKKFTENYSLQQGCLVVFEYEGVSKF--DVLILD 100
                     345588*********544....44459999999********..9999*****************************99999..777766 PP
2B344.52.7e-142012821399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++rl++p       g++++++ + ++ +   rsW++kl   ++ ++  +++GW+ F+++ gL+ gD++vF+l+++++  ++v+vf++
  XP_004500187.1 201 ENRLYVPDLK----GIIENKE-KNVMLQIGKRSWNMKLLRFRSNNGRRFSSGWSLFARQSGLQPGDVCVFELINKNDLVFKVHVFKR 282
                     4455555433....2333333.345567899*******664444444699***********************99999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.8589102IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-2011109IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-1411100No hitNo description
SMARTSM010191.1E-1512102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1912102IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-122098IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15185283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-15186283IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-15189281No hitNo description
PROSITE profilePS5086312.393189283IPR003340B3 DNA binding domain
SMARTSM010193.8E-11190283IPR003340B3 DNA binding domain
PfamPF023623.6E-12191282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MARGNPTLPI RFFKIILQTN LQKIKIPNNF TRSYGFGLSN PVFIMLPDGT KWKVYWKKIN  60
GEIWLEKGWK KFTENYSLQQ GCLVVFEYEG VSKFDVLILD QTAVEIDYSS CHTFDENKNL  120
AHSDDDSIEI LDELPKKKTR QRSPLVSPRP LKKVRGETEK TAKRTSSLNW PKGARAQEIS  180
KKFISCNPFF TRLIKTINMV ENRLYVPDLK GIIENKEKNV MLQIGKRSWN MKLLRFRSNN  240
GRRFSSGWSL FARQSGLQPG DVCVFELINK NDLVFKVHVF KRDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500187.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500187.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S2Y6J00.0A0A1S2Y6J0_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004500187.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-25B3 family protein