PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500080.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 542aa    MW: 61082.8 Da    PI: 6.7109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-174289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt+Ed +l+d+v++ G g+W+++ r  g++R++k+c++rw ++l
   XP_004500080.1 42 KGPWTTQEDAILIDYVTKQGEGNWNAVQRNTGLNRCGKSCRLRWANHL 89
                     79******************************************9986 PP
2Myb_DNA-binding50.93.5e-1695138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++ eE++l+v++++q+G++ W++ a+ ++ gRt++++k++w++
   XP_004500080.1  95 KGAFSSEEEKLIVELHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 138
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7193789IPR017930Myb domain
SuperFamilySSF466891.72E-2939136IPR009057Homeodomain-like
SMARTSM007171.3E-134191IPR001005SANT/Myb domain
PfamPF002492.0E-144289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-224396IPR009057Homeodomain-like
CDDcd001678.61E-104489No hitNo description
PROSITE profilePS5129424.03990144IPR017930Myb domain
SMARTSM007173.6E-1594142IPR001005SANT/Myb domain
PfamPF002491.9E-1495138IPR001005SANT/Myb domain
CDDcd001676.15E-1197138No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2497143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEHMTNMVDG LNDENGLFGM MERNGGGGGG GGGGGEEMSL KKGPWTTQED AILIDYVTKQ  60
GEGNWNAVQR NTGLNRCGKS CRLRWANHLR PNLKKGAFSS EEEKLIVELH AQFGNKWARM  120
AALLPGRTDN EIKNYWNTRI KRRQRQGLPL YSDDHDHSTT PTTPTTPSPC VTPTGSNPNI  180
NTTPKFEFFH QNHHQYQQQQ QQHHHPLSPT QHHHYSPLSS PLQHRQQQQQ QHQQHSYSPH  240
TFLDTSPTPL SSSTPSSLSF TFQRPAPLLN NPLCFKRYRS SPNFNLQQLH SITPNCSSSL  300
HDPSLNSHHD HNGFRFPVQY NSSFSQYFQT PLLESDRGVS SSSSSSPFST KLELPSNHYS  360
RTHLDHDIKH HNIEFNNDTS FQNNSGLFGD LLMEAQTMAC GQNSKKRSYL SLNEGNDMFN  420
GCQSIDDYPL SSLYWSSNSG QKAKEEAPDL NKFMNDEMST MLSVMPSSTM QSQDWNTDNN  480
NNNNSASDVS NVQSSSGVMT EENFGLDIKP IASLFPLTNT TNHNSNNENN EFYTWDNLPG  540
LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30401435107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500080.10.0transcription factor MYB74
TrEMBLA0A1S2Y8090.0A0A1S2Y809_CICAR; transcription factor MYB74
STRINGXP_004500080.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-63myb domain protein 33