PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 726aa MW: 78504.8 Da PI: 6.1112 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 305 | 325 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_004499884.1 305 PCPDFRK-GACRRGDMCEYAHG 325 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.18E-18 | 34 | 180 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 7.5E-18 | 39 | 179 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.50E-15 | 39 | 179 | No hit | No description |
Pfam | PF12796 | 1.8E-10 | 82 | 155 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.29 | 87 | 179 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0092 | 87 | 117 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.835 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.9E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-5 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 333 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 24 | 335 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MCGGPEKSKS LSTSSSSSPS AVEGSNNVKD MKNLTVHTDD SFSSLLELAS NNDFEEFKVA 60 LDSSASLINE VGFWYVRQNG SKQIVLEHRT PLMVAASYGS IDILKLILSC PEADVNFSCG 120 TDKSTALHCA ASGGSVNAID AVKLLLSAGA EINCVDANGN RPVDVIVFPP KLEGVKIILG 180 ELLSDSTSDG SVDDCSLPVS IDSSSPGSAA PSSSIENGYP TSPVALKFTD PAVNSTPEKR 240 EYPIDPSLPD IKNSIYATDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCNRR VCFFAHIAEE 360 LRPLYVSTGS AVPSPRSSAS APNVMDMAAA MSLFPGSPSS MSSMSPSPFA QPISPSANGI 420 SHSNNAWPQP NVPALHLPGS NIQTSRLRSS LSARDMPLED FHNMLQDFDG QQHILNDMGC 480 FSQPRPGAIS VSRPGRSKIL TPSNLDDLFC AEISSSPRYS DPAPASVFSP THKSAVFNQF 540 QQLQSSLSPI NTNVMSPKNA EHPLFHQASY GVSSPGRMSP RSMEPLSPMS ARMSAFAHRE 600 IQQQQLRSLS SRELGANNSV SVVGSPVNSW SKWGSPNGKA DWSVNGNEFG RSQRSTSFEH 660 GNNGEEPDLS WVQSLVKESP PEIKEKLAGS GPIASAEMNS NPQVDSIDHS VLGAWLEQMQ 720 LDQLVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499884.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499884.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S2Y5T6 | 0.0 | A0A1S2Y5T6_CICAR; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_004499884.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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