PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499875.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 342aa    MW: 39257.1 Da    PI: 5.8289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-163279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_004499875.1 32 KGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 79
                     678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1685129147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++ 
   XP_004499875.1  85 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 129
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.362779IPR017930Myb domain
SuperFamilySSF466892.27E-2830126IPR009057Homeodomain-like
SMARTSM007179.1E-133181IPR001005SANT/Myb domain
PfamPF002493.9E-143279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-233386IPR009057Homeodomain-like
CDDcd001677.61E-113579No hitNo description
PROSITE profilePS5129426.12680134IPR017930Myb domain
SMARTSM007171.8E-1684132IPR001005SANT/Myb domain
PfamPF002492.9E-1585129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2687135IPR009057Homeodomain-like
CDDcd001671.57E-1187130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQMRKPDLIT GINNKMNNNN NNNNISKNKL RKGLWSPEED EKLVRYMITK GQGCWSDIAR  60
NAGLQRCGKS CRLRWINYLR PDLKRGAFSP QEEELIIHLH SILGNRWSQI AARLPGRTDN  120
EIKNFWNSTL KKRLKTNNNN TSQSPSDSSD QQIDVFDMKN NMIMPINEQD LMTLCMDNSS  180
SSTSSSSIQS MQMHAMVLSD QFDHPFSLLS NINNIPTCLT QDGNMVVDDI GLHSDDHYGI  240
LEANNKMGLL ENDFELPPLE SRISMEDKSM IPLINHNVMK SYNINHFNNS CFNNTNQIQN  300
SKVEDFFGFG NHGQGENLRM GEWDFEGLMQ DMSYFPTLDF QV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28301365110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKKRLKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499875.10.0transcription factor MYB83-like
TrEMBLA0A1S2Y5Z60.0A0A1S2Y5Z6_CICAR; transcription factor MYB83-like
STRINGXP_004499875.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-69myb domain protein 83