PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499811.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 407aa    MW: 47124.4 Da    PI: 9.2855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-18178224148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   XP_004499811.1 178 KGQWTVQEDRLLIQLVEKYGLRKWSHIAQLFP-GRIGKQCRERWHNHL 224
                      799*****************************.*************97 PP
2Myb_DNA-binding50.26.1e-16232272345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eEd++l++a+ + G++ W+ Ia+ +  gRt++++k++w+
   XP_004499811.1 232 IWSEEEDKILIKAHSEIGNK-WAEIAKILA-GRTENSIKNHWN 272
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.105173228IPR017930Myb domain
SuperFamilySSF466891.47E-31175271IPR009057Homeodomain-like
SMARTSM007172.7E-17177226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-25179228IPR009057Homeodomain-like
PfamPF139212.2E-18181238No hitNo description
CDDcd001677.69E-16181224No hitNo description
Gene3DG3DSA:1.10.10.609.9E-21229277IPR009057Homeodomain-like
PROSITE profilePS5129419.798229279IPR017930Myb domain
SMARTSM007172.5E-15229277IPR001005SANT/Myb domain
CDDcd001673.33E-12233275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNLETKLTLI YASKPQYSLE NYYMKNHENP IGGFPNSSQG FMQDFNHINK FNVNGSFFNP  60
VSGVQTTNFD PCDNFTYDFK PNLMENNGNG NAYVMDNFLY GGYGLNISQR NNNKVEMMVT  120
NQQNYFPFNI NSQGTKPLNF VVPDQISCIS PMNYYKRIGM NRNNARKTEK VQKSNIVKGQ  180
WTVQEDRLLI QLVEKYGLRK WSHIAQLFPG RIGKQCRERW HNHLRPDIKK DIWSEEEDKI  240
LIKAHSEIGN KWAEIAKILA GRTENSIKNH WNATKRRQYS KRKCRSKYPR GTLLQEYIKS  300
LNLDKNPPKD YRRKPTNNAT LFKNKTSQIT LSQTPYQQFC PNQCLVPSSD FDDVQDFESL  360
FQDGCSIDSL LEDMKCGSSV NLVDETDIMG SVMVGVEVKK EMVSLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-441762782104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-441762782104C-Myb DNA-Binding Domain
1msf_C4e-441762782104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1312394e-83AC131239.20 Medicago truncatula clone mth2-18o15, complete sequence.
GenBankAC1575384e-83AC157538.19 Medicago truncatula clone mth2-150a17, complete sequence.
GenBankCT9542364e-83CT954236.4 M.truncatula DNA sequence from clone MTH2-3H12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499811.10.0transcription factor MYB98-like
SwissprotQ9S7L22e-93MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A1S2Y6Z70.0A0A1S2Y6Z7_CICAR; transcription factor MYB98-like
STRINGXP_004499811.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-95myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]