PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 357aa MW: 40421.8 Da PI: 8.5014 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.2 | 1.8e-31 | 50 | 172 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaess 78 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak++i+el+ + + ++++s XP_004499467.1 50 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKHEIDELPPLpnfpshgnfnfgfpsiN------IeaNTNTS 138 689*************************************************************75555555555333321......12344455 PP TCP 79 sssasnsssg.................kaaksaakskksqksaa 105 + +++ +++ ++k+ + XP_004499467.1 139 QLNQQLLNINrnipwegstssqnsmwkL----------KPKEVT 172 5555533333445576543322222220..........222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.997 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-29 | 52 | 182 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MIKNSKEALK QEGHSNSNND EKEKASSSNS LASQWSRLKD PRIVRVSRAF GGKDRHSKVC 60 TIRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NVAKHEIDEL PPLPNFPSHG 120 NFNFGFPSIN IEANTNTSQL NQQLLNINRN IPWEGSTSSQ NSMWKLKPKE VTQEMVIDNK 180 ANYWMNRIEE DDDNNNKHGS NEGNNSSDHV LSSNNNNLLL QRTNHQASFL GLLNTMPSMG 240 NYQWGGNSNV DVNSQLGNHI GFTNQTNVNV VTSLPPMLSL STGNSQMMPY FPSHHHVNAM 300 EMDNHHHQRQ INHHNYQMLS SSSQNPLNNS LNNPSFNLAM MIPKENPSNK DQDFTPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499467.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052494 | 1e-100 | BT052494.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-J-6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499467.1 | 0.0 | transcription factor TCP5-like | ||||
TrEMBL | A0A1S2Y699 | 0.0 | A0A1S2Y699_CICAR; transcription factor TCP5-like | ||||
STRING | XP_004499467.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-44 | plastid transcription factor 1 |