PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004499360.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

ZF-HD

Protein Properties

Length: 318aa MW: 35013.3 Da PI: 7.7724

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004499360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.1	6.6e-31	86	140	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrY+eClkNhAa++Gg+a+DGCgEfmp+ geegt++al C+AC CHRnFHR+eve XP_004499360.1 86 VVRYRECLKNHAAAMGGNATDGCGEFMPN-GEEGTIEALICSACHCHRNFHRKEVE 140 589***********************8.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.9E-28	87	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-29	88	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.366	89	138	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-21	92	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-29	232	306	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.44E-18	244	306	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.3E-27	245	301	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MEPSSRQDGG GENIPIPINI SSVGTVNGHG GAHNMIHHHN QLHNVITSST VAVAVAVAAP 60 HNNPCSNGTT VGEVDESSYK KVDVVVVRYR ECLKNHAAAM GGNATDGCGE FMPNGEEGTI 120 EALICSACHC HRNFHRKEVE GGGGGSITDD MLDNYHHHHS SNFNFNFNNR KFMLPALPDP 180 HIGYHPTAAA AAGNNNSNIL PSRVVPPHVH GHGHIIMPFN YNIPSLPSES DEQEEGRHTQ 240 VPVVKKRFRT KFTQEQKDKM LSFAEKVGWK IQKQEESLVQ QFCQEIGVRR RVLKVWMHNN 300 KHNLAKKLHT NLPPTTSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	246	303	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004499360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004499360.1	0.0	zinc-finger homeodomain protein 2
Swissprot	O64722	5e-66	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A1S2Y4Y2	0.0	A0A1S2Y4Y2_CICAR; zinc-finger homeodomain protein 2
STRING	XP_004499360.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-59	homeobox protein 31

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]