PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499266.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27467.4 Da PI: 5.3077 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f t eAa a++aa++kl+g XP_004499266.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.08E-22 | 38 | 98 | No hit | No description |
SMART | SM00380 | 1.4E-35 | 39 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-21 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 39 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.431 | 39 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 39 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLKSGIGIEE RKQLKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR 60 GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELSV TTNSTTTQQI PQINIPHNNN 120 NIKNFSVSST VHNNNSCFNN NNNNTNNSVF GAIYSSSDNS IVSIPLEQQV VESSYTKHMD 180 HSDSFFGTVN YESTMPVVDD DSIWTEAAMS LDAAISMDFP MISDDDGIYS TGNFSEVAAW 240 DSLQTPWCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 40 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499266.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC159535 | 1e-110 | AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence. | |||
GenBank | AC160013 | 1e-110 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499266.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A1S2Y4I8 | 0.0 | A0A1S2Y4I8_CICAR; dehydration-responsive element-binding protein 2D | ||||
STRING | XP_004499266.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-42 | ERF family protein |