PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499259.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 777aa MW: 87159.7 Da PI: 6.6045 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.1 | 2.8e-22 | 435 | 535 | 1 | 97 |
EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++k+ g lv+p + +++ +++ +tl+++d++g+sW++ + yr++++r+vl+k+W++Fvk+++Lk+gD+v+F + ++ XP_004499259.2 435 FCKTLTASDTSKRsGSLVVPQTATKDLfppldyTVQPTI-QTLIFRDLHGNSWKFHHVYRGSPKRHVLGKCWSDFVKSKRLKAGDSVIFIR--DE 526 99********999788999*9999888****97555555.59************************************************4..56 PP EE..EEEEE CS B3 89 efelvvkvf 97 + +l+v+v+ XP_004499259.2 527 KSQLLVRVR 535 666799887 PP | |||||||
2 | Auxin_resp | 94.3 | 1.9e-31 | 203 | 285 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+++s+++vvYnPra+tseFv+++ k++kal+ ++s+G Rf m+fete++ +rr+ Gt+vg+sdldp+ Wp+SkW++++ XP_004499259.2 203 LAAAANRSPWTVVYNPRACTSEFVIPLVKYNKALRtPELSIGLRFGMMFETEEFGTRRYLGTIVGISDLDPLMWPDSKWKNIQ 285 57899******************************5579*****************************************976 PP | |||||||
3 | Auxin_resp | 63.8 | 6.2e-22 | 559 | 624 | 2 | 66 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgv 66 aa+++s+++vvYnPra+tseFv+++ k++kal+ ++s+G Rf m+fete++ +rr+ Gt+v XP_004499259.2 559 LAAAANRSPWTVVYNPRACTSEFVIPLVKYNKALRtPELSIGLRFGMMFETEEFGTRRYLGTIVVE 624 57899******************************5579***********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-7 | 116 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-5 | 122 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 1.1E-26 | 204 | 285 | IPR010525 | Auxin response factor |
Gene3D | G3DSA:2.40.330.10 | 9.9E-34 | 430 | 547 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-27 | 432 | 539 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-19 | 433 | 535 | No hit | No description |
Pfam | PF02362 | 1.8E-19 | 435 | 535 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-20 | 435 | 538 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.139 | 436 | 538 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-17 | 560 | 626 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MKDGRHIGKG NCSNDTMVTE TLNSELWHAC AGPLVSLPHV DSPVYYFPQG QIEQGAAPTT 60 RIPNYPNLPS QLLCQVQNLT LHADKETEEI YAQMTLQPLH HDVFIEVNNL SPLPSVGLKA 120 NASKHLFCKT LTASDTSKRS GSLVVPQTAT KDLFPPLIYD GLSEITKTKQ HFEVWVGVRY 180 ADSQHSSHPS SILFADNMHI DVLAAAANRS PWTVVYNPRA CTSEFVIPLV KYNKALRTPE 240 LSIGLRFGMM FETEEFGTRR YLGTIVGISD LDPLMWPDSK WKNIQVEWDQ PGCGEKPNRV 300 SLWDILLLSQ SLTSCSQRPL QSGLSVTETL NSELWHACAG PLVSLPHVDS PVYYFPQGQI 360 EQGAAPTTRI PNYPNLPSQL LCQVQNLTLH ADKETEEIYA QMTLQPLHHD VFIEVNNLSP 420 LPSVGLKANA SKHLFCKTLT ASDTSKRSGS LVVPQTATKD LFPPLDYTVQ PTIQTLIFRD 480 LHGNSWKFHH VYRGSPKRHV LGKCWSDFVK SKRLKAGDSV IFIRDEKSQL LVRVRYADSQ 540 HSSHPSSILF ADNMHIDVLA AAANRSPWTV VYNPRACTSE FVIPLVKYNK ALRTPELSIG 600 LRFGMMFETE EFGTRRYLGT IVVELDVKER TNNDIGGVET LCSPLYQPEL LEGVRACVQA 660 IFEYKYSILQ PKNCKSERKT KNKRQLNMSS KNKDSGSKYD ESDTEYNRIL DLAILKGICR 720 DECYDFGRDN VESDSDDEII NNEENKEIVN LSNEDDNKKD DGTTKNGSKA VSTTSDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-120 | 22 | 622 | 51 | 387 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499259.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189433.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | P93024 | 1e-115 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A3Q7XQ20 | 0.0 | A0A3Q7XQ20_CICAR; Auxin response factor | ||||
STRING | XP_004499259.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 1e-117 | ARF family protein |