PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 410aa MW: 45401.8 Da PI: 9.2585 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 176 | 198 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C Cg++F+ ++L+ H+ + H XP_004499248.1 176 ACDQCGEVFPKIESLELHQAVrH 198 69*****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 175 | 198 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.767 | 175 | 203 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.15E-23 | 200 | 406 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.0E-12 | 202 | 406 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MKERTHFLSL LLPFYFLILF LMALLTSLPQ QSHPKHKHNK KQKPKATSSW DQIKNILTCK 60 QMEGSTVHDP SKANNNGYSK MGSTCRSICS LRDVVHGNTR VVHRSDNSSP ESSVLGQETS 120 LLKRKPSGKS NGGGNYTSSS STTSRGMQFR KLSGCYECHM IVDPTRLPIP RSTVCACDQC 180 GEVFPKIESL ELHQAVRHAV SELGPEDSGR NIVEIIFKSS WLKRESPMCK IERILKVHNT 240 QRTIQRFEEC RDTVKSRATN TTKKNPRCAA DGNELLRFHS ATLTCALGAR GSSSLCATVP 300 GCGVCTIIRH GFQNKGGVRT NASSGRAHDY SVERCEEEDS RRAMLVCRVI AGRVKRVAEE 360 GAPQLSEEEG VSYDSVAGYA GIYSNLEELT VFNPRAILPC FVVIYKVLSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499248.1 | 0.0 | uncharacterized protein LOC101513058 | ||||
TrEMBL | A0A1S2Y4H8 | 0.0 | A0A1S2Y4H8_CICAR; uncharacterized protein LOC101513058 | ||||
STRING | XP_004499248.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-166 | C2H2-like zinc finger protein |