PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499211.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SRS
Protein Properties Length: 330aa    MW: 36526.9 Da    PI: 7.825
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.41.9e-681192674153
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                     g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++++++++++ ++s+r+re+++ +  ++s ++++   +++
  XP_004499211.1 119 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLTALQQQNQQQQQFHSSRRHRETQT-AVVSASLASTPLPITTT 212
                     789*********************************************************99999999999999744.44444444555555667 PP

          DUF702  99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      le+ ++P+e++s+avfrcv+vs++d ++e +aYqtav+igG vfkGiLydqGle
  XP_004499211.1 213 GLEVGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLE 267
                     899999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.7E-65120267IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-26122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-23219266IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAGFFSLSSG RGKEEVREEE ENNNNNNNNN LFRNEEIYNK GFEIWPQQQH SSFHHHHQHQ  60
HHQNLNNFYT FGVGSSSTTN RRNNDNNNIN DDVVSVSFSD ESTRFGLTVM RPGVGLSGGG  120
MNCQDCGNQA KKDCPHLRCR TCCKSRGFQC STHVKSTWVP AAKRRERQQQ LTALQQQNQQ  180
QQQFHSSRRH RETQTAVVSA SLASTPLPIT TTGLEVGNFP PELNSPAVFR CVKVSAMDAQ  240
DERYAYQTAV NIGGRVFKGI LYDQGLEGNY TSAHGGGAGE GSSGGGEGQQ QNLLTTATTS  300
VNNPFEYSSL YPAPLNAFMA GTQFFPPPRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499211.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0163370.0DQ016337.1 Cicer reticulatum clone Crt93 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499211.10.0protein SHI RELATED SEQUENCE 5-like
TrEMBLA0A1S2Y4F00.0A0A1S2Y4F0_CICAR; protein SHI RELATED SEQUENCE 5-like
STRINGXP_004499211.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-66SHI-related sequence 5