PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499102.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 595aa    MW: 66592.9 Da    PI: 8.4683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-16241051198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++s  +++p  f+ +++g + ++  ++l+ +sg++W+v+l    + +  ++  GW+ Fv +++Lk gD +vF+++g+  f  +v+vf 
  XP_004499102.1  24 SSSETMRIPDGFICQMEGRT-CG-LVSLTGPSGNTWQVRL--VEQNNYLFFHHGWSTFVGDHNLKYGDLLVFRYEGQLHF--TVQVFG 105
                     567889******98888774.54.9***************..888889*************************9986555..888886 PP
2B350.73.3e-16255346195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+k+ ++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e   +v
  XP_004499102.1 255 FVKIIKSFNVSGSYTLNIPYQFSMSHF--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELIRECEL--RV 345
                     778888888999999********9998..55999***************954566666799************************996555..44 PP

                     E CS
              B3  95 k 95 
                     +
  XP_004499102.1 346 R 346
                     4 PP
3B350.44.2e-16484571191
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k++++ +v+ s  l +p +f ++h  +     ++++tl++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+++   e
  XP_004499102.1 484 FVKIMKKFNVSGSYTLKIPYQFSAAHlpS----YKTEVTLRNSKGQCWTVNSVPDAKGRTiHTFCGGWMAFVRDNDINFGDTCIFELVSH--YE 571
                     89999999***************999533....3458***************777777667*************************9864..33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2012109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.21214107IPR003340B3 DNA binding domain
SMARTSM010193.8E-1017107IPR003340B3 DNA binding domain
CDDcd100172.40E-1521104No hitNo description
SuperFamilySSF1019361.28E-2023112IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1324105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-22246347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-23248348IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-19253347No hitNo description
PfamPF023621.6E-12255346IPR003340B3 DNA binding domain
SMARTSM010194.0E-12255351IPR003340B3 DNA binding domain
PROSITE profilePS5086312.76255351IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-21476577IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23477578IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-18482576No hitNo description
PfamPF023621.7E-13484570IPR003340B3 DNA binding domain
SMARTSM010191.3E-9484580IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915484580IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MACDCKGKLN VRRPHFYEVY SLASSSETMR IPDGFICQME GRTCGLVSLT GPSGNTWQVR  60
LVEQNNYLFF HHGWSTFVGD HNLKYGDLLV FRYEGQLHFT VQVFGENACE KEAAFHSECN  120
LNSFNFDNIK GQKSDAMESS SLDVVGGDQR KMRCDTIENQ ELALGIAGRD LSKYEVVKPI  180
SIIREIEETY KECSTSAVPV PFHPANINED EEAAILYRSG KEDDHYIVSG ASMSKLSAHD  240
EKKIAQSFTS SFPYFVKIIK SFNVSGSYTL NIPYQFSMSH FPNCKIKIIL HNLKGEHWTV  300
NSVPTTRVHT SHTLCGGWMA FVRGNNIKVG DVCIFELIRE CELRVRVAEV GKDGLDCQVG  360
KLAFSMLSTG HDVACNKTSK YKPKNPKVSS KCRNKVDLFD KKISKIGQEA VLSIDLKTSG  420
RASNTSKKMG LCPQSKASHK KLAVSRRHRV EDELSSQAKA GLRMLFALDE QRVAQAFSSP  480
FPNFVKIMKK FNVSGSYTLK IPYQFSAAHL PSYKTEVTLR NSKGQCWTVN SVPDAKGRTI  540
HTFCGGWMAF VRDNDINFGD TCIFELVSHY EMQVYISGVG KEGLDDQNGL VKLNG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484041e-176AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024881e-176AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499102.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A1S2Y4B70.0A0A1S2Y4B7_CICAR; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_004499102.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-21B3 family protein