PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498968.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 223aa    MW: 25464.7 Da    PI: 4.4601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-182574255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr +k +g+Wv+eIr p++   r r++lg+++t e+Aa+a +aa  +l+g
  XP_004498968.1 25 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALFCLRG 74
                    59****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-282484No hitNo description
PROSITE profilePS5103222.0492582IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-202582IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-282583IPR001471AP2/ERF domain
SMARTSM003805.4E-322588IPR001471AP2/ERF domain
PfamPF008473.2E-112674IPR001471AP2/ERF domain
PRINTSPR003671.8E-92637IPR001471AP2/ERF domain
PRINTSPR003671.8E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAGSNPTTTN NNNSCSNNNT SNNKLYKGVR KRKWGKWVSE IRLPNSRERI WLGSYDTQEK  60
AARAFDAALF CLRGRHAGFN FPNTPLSINV PFHGHNSLSP QEIQEVASKF ANDPPIELTQ  120
EDQDQQVPLE SQNNSVNSNN SNSLYDHNND GSVQVDYGDL RMMDWRFDDM LDDLNEVACS  180
DSGLYSGLEK MQYSTQLFEE DNVYQIEGED AFSNHSFLWS WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1426831573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498968.11e-167ethylene-responsive transcription factor ERF018-like
SwissprotQ9S7L52e-44ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A1S2Y3W81e-166A0A1S2Y3W8_CICAR; ethylene-responsive transcription factor ERF018-like
STRINGXP_004498968.11e-166(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]