PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498932.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 296aa    MW: 33265.9 Da    PI: 4.9793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l+ + + +G+  +W + +++ g++R++k+c++rw++yl
   XP_004498932.1 14 RGPWSPDEDATLKSYLEIHGTSgSWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding475.8e-1569111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + +q+G++ W++Ia++++ gRt++++k++w++
   XP_004498932.1  69 GGFTEEEDTIICTLYAQMGSR-WSAIASKLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.493962IPR017930Myb domain
SuperFamilySSF466897.59E-2611109IPR009057Homeodomain-like
SMARTSM007171.2E-91364IPR001005SANT/Myb domain
PfamPF002494.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-221569IPR009057Homeodomain-like
CDDcd001673.39E-71662No hitNo description
PROSITE profilePS5129422.5163117IPR017930Myb domain
SMARTSM007176.6E-1467115IPR001005SANT/Myb domain
PfamPF002493.8E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2470117IPR009057Homeodomain-like
CDDcd001672.38E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRSPCCDKE NVKRGPWSPD EDATLKSYLE IHGTSGSWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTEEEDTIIC TLYAQMGSRW SAIASKLPGR TDNDVKNYWN TKLKKKIIAG  120
KVTIQPMTQN DTFLPSTPSP TQNPQYFPTS QTQYSPPSSL PIMLDNNNYD ANYGFNNNEK  180
IMGFDQIHDQ LYNPSVNDVV VSQIGTSNNN NNNSNINPMM SMSQDCSSIE VNNNCELLQD  240
QVGDHESVDP LLDFGFGFPH DHENGLNNCP DKVGDFGSSF CFSEWVDFSH ADIKPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498932.10.0transcription factor RAX2-like
TrEMBLA0A1S2Y3Y50.0A0A1S2Y3Y5_CICAR; transcription factor RAX2-like
STRINGXP_004498932.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-69myb domain protein 84