PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498879.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 470aa    MW: 53311.3 Da    PI: 8.3873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166686323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k F r  nL+ H r H
  XP_004498879.1 66 CEICNKGFQRDQNLQLHKRGH 86
                    ******************988 PP
2zf-C2H2120.00065141163123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_004498879.1 141 WKCEKCSKKYAVQSDWKAHSKIC 163
                     58*****************9876 PP
3zf-C2H211.20.0011171189523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr++++ +H   +
  XP_004498879.1 171 DCGTPFSRRDSFITHRAFC 189
                     9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.0E-76386No hitNo description
Gene3DG3DSA:3.30.160.601.2E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.116486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7836486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355120106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.0E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MMKGFAVDEN MSNLTSVSSE ISASSANKNE NASTKRKRNL PGHPDPEAEV IALTPQTLIA  60
TNRFLCEICN KGFQRDQNLQ LHKRGHNLPW KLKKRNNNEV IRKKVYVCPE PTCVHHDPLR  120
ALGDLTGIKK HFFRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTREYKC DCGTPFSRRD  180
SFITHRAFCE VLSHENNING TSMNPQNFTS HSQFHHSHGS FEAPSLKKEE EMNHFNLRQQ  240
IPSWFSSSTP QQQILPIHHH QNPNPTTLFP SFNSNNNSSD SPHMSATALL QKASQIGVTM  300
NKTETSICRP HLNMQTHVPQ YGNNNMVIMP SREEIGTDFS HCLESYENKA TITSHNNNCF  360
EASSSVLHDQ GFVVGMFDDQ QRDDNNNNNN NNNNFGELVS KPTQYYSHFG KTNKGGGGAN  420
DDGEMTKDFL SLAAFSQRDQ YLFNISTNID DPLASLSFGK QNQNQTFWRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-31137196362Zinc finger protein JACKDAW
5b3h_F2e-31137196362Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190103KLKKRNNNEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1529201e-140AC152920.17 Medicago truncatula clone mth2-101o15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498879.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-114IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1S2Y3Q10.0A0A1S2Y3Q1_CICAR; protein indeterminate-domain 7-like
STRINGXP_004498879.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-94indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]