PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498877.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 382aa    MW: 44267 Da    PI: 7.9408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014146169123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg+ ++++ +Lk+H +  H
  XP_004498877.1 146 YVCTVCGRKCKTNLDLKKHFKQlH 169
                     9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.3E-666136IPR029060PIN domain-like
SMARTSM003550.0048146169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
CDDcd061677.14E-12160300No hitNo description
Gene3DG3DSA:3.40.50.10105.3E-6231285IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNSQLLLYAN ATPTPTHTLH SHSHYSFFRK TKTPIRIRCC TTTTTTTTTT IDIEMVKTKQ  60
GTYEPKQNKV VVLWDLDNKP PRGPPYEAAL SLKTLAERFG QLTDFSAYAN RHAFIHLPQW  120
VLNQRRERKN LDILERKGII NPSELYVCTV CGRKCKTNLD LKKHFKQLHQ RERQKKLNRL  180
NSLKGKKRQK YKERFVSGDH KYNDAVRRIV TPKVGYGLAS ELRRAGVFVK TVEDKPQAAD  240
WALKKQIMHS MTRGIDWLFL VSDDSDFSDM LRRAREANLG TVVVGDVDRV LGRDADLWVP  300
WTAVENGEVM DMDLVPKSRG RRRNSTGTTT TTTMNDFGDV LFFHGGEEME EDFMLEYSED  360
EDFDDDEYTS DEEEEDDGFY IY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498877.10.0uncharacterized protein LOC101501064
TrEMBLA0A1S2Y4Y60.0A0A1S2Y4Y6_CICAR; uncharacterized protein LOC101501064
STRINGXP_004498877.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-133C2H2-like zinc finger protein