PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498786.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARR-B
Protein Properties Length: 499aa    MW: 55987 Da    PI: 7.0774
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28202255155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av++L G +kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_004498786.1 202 KPRVVWSVELHRKFVAAVNHL-GVDKAVPKKILDLMNVEKLTRENVASHLQKYRL 255
                     79*******************.********************************8 PP
2Response_reg74.83.2e-25231281106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+++ +++l+++l++ +y +v++a+++  al+ll+e++  +Dl++  + mp+mdG++ll+     e++lp+i+++a+++++++ + +  G
  XP_004498786.1  23 VLAVDDDRTCLKILERLLQRCQY-HVTTAQNAITALNLLRENKnnFDLVISNVHMPDMDGFQLLELVGL-EMDLPVIMFSANDDPKMVMKGIAHG 115
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a d+l Kp+ ++e
  XP_004498786.1 116 ACDYLLKPVRMKE 128
                     ********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.3E-1543493IPR017053Response regulator B-type, plant
SuperFamilySSF521723.42E-3520144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.8E-4120160No hitNo description
SMARTSM004481.6E-3021133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.78722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2223129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.41E-2724137No hitNo description
SuperFamilySSF466896.81E-20199259IPR009057Homeodomain-like
PROSITE profilePS5129412.975199258IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-25202255IPR006447Myb domain, plants
PfamPF002494.8E-7204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MTVVVKDDKM NDLKDQFPIG MRVLAVDDDR TCLKILERLL QRCQYHVTTA QNAITALNLL  60
RENKNNFDLV ISNVHMPDMD GFQLLELVGL EMDLPVIMFS ANDDPKMVMK GIAHGACDYL  120
LKPVRMKEVQ IIWQHVIRKK KTCKTSNQNV PNSDSGNGID SAVTANSDQN VKPSKKRKDQ  180
SGDDGEENDD DHDNEDPTAP KKPRVVWSVE LHRKFVAAVN HLGVDKAVPK KILDLMNVEK  240
LTRENVASHL QKYRLYLKKL STVPNQQANM EAALASSDIS YSRLNSLNGV GGNLHTLSAS  300
RQFHNNNNPF RTFPSNGMTN ILNPNVHGIA SSGTHQLSHT HNDQLKFQSV VPRANPINLD  360
QLQHNRGISP MQNVTNKLSN YKPKVPCSVF DISNKPLLLE ANPQDKQYKI NLASHQPPQY  420
NDIWSNTMQL PHDSMNSQAV VFTSTNNVAF QDWDSNNNIH DDGSYHSQAI GNSVGTMVPV  480
ESEGIYDESH EGSKYWNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-27198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498786.10.0two-component response regulator ARR12 isoform X2
SwissprotB8AEH11e-122ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X61e-121ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A1S2Y4Q60.0A0A1S2Y4Q6_CICAR; Two-component response regulator
STRINGXP_004498785.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-115response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]