PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498766.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 443aa    MW: 49687 Da    PI: 6.142
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073894222154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_004498766.1 389 KWPYPTEEDKTRLVQETGLQLKQINNWFINQRKR 422
                     469*****************************87 PP
2ELK27.57.3e-10343364122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_004498766.1 343 ELKHELKHGYKEKIVDIREEIL 364
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-20176220IPR005540KNOX1
PfamPF037902.0E-18179219IPR005540KNOX1
SMARTSM012567.4E-27230286IPR005541KNOX2
PfamPF037911.7E-20237285IPR005541KNOX2
PfamPF037893.4E-5343364IPR005539ELK domain
SMARTSM011880.0023343364IPR005539ELK domain
PROSITE profilePS512139.551343363IPR005539ELK domain
PROSITE profilePS5007111.693363426IPR001356Homeobox domain
SMARTSM003899.3E-11365430IPR001356Homeobox domain
SuperFamilySSF466897.7E-16365428IPR009057Homeodomain-like
CDDcd000863.76E-11366427No hitNo description
Gene3DG3DSA:1.10.10.607.3E-25370427IPR009057Homeodomain-like
PfamPF059208.6E-18383422IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAYHNQHLSQ QLPIHHFTEQ TNSFRSILPD QLPSSPDPNS KPGSDPNQHH TLQTTPNWLN  60
NALLRTHYTD NNNNHNNNDD VTNDVNNNDT NVNAVNGNAA SNFLNLQTSS DSNQWLARSI  120
LHRHHGEVID DVGVIAGAGG ERGVNELGEL KGEGVGGKEE TVVGDGGGGM VNWQTGRWKA  180
EIMAHPLYEQ LLSAHVACLR IATPVDQLPR IDAQLAQSQN VVAKYSAAFG QNVVGVDDKE  240
LDHFMSHYVL LLCSFKEQLQ QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGTGATMSDD  300
EDDQVDSDVN MFDNSLDGAD TMGFGPLIPT ENERSLMERV RQELKHELKH GYKEKIVDIR  360
EEILRKRRAG KLPGDTTSVL KAWWQSHSKW PYPTEEDKTR LVQETGLQLK QINNWFINQR  420
KRNWHTNPST STVLKSKRKR SQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419439RKRNWHTNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2966870.0KP296687.1 Pisum sativum cultivar SGE class II knotted-1-like 3 homeobox transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498766.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A1S2Y5B10.0A0A1S2Y5B1_CICAR; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_004498766.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-166KNOTTED1-like homeobox gene 3