PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | SRS | ||||||||
Protein Properties | Length: 319aa MW: 34787.8 Da PI: 7.6494 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 174.5 | 5e-54 | 125 | 277 | 6 | 153 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstklssa 94 C+dCGn+akkdC+++RCRtCCk rg+dC th+kstW+p+++rrer + + a++ ++++ + +++++++++ +s +ss XP_004498694.1 125 RVCEDCGNRAKKDCVFRRCRTCCKGRGYDCCTHLKSTWIPSTRRREREIEVVGGGGDGVAKRlksligSSQNVSANSHSSNSNATTPKSFATSSC 219 58*********************************************877766655555555344443222222222223334444444444444 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ ++ +lP +v+++avf+c rv+++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ XP_004498694.1 220 HQDAGFKE-TLPGHVQAPAVFKCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 277 44444443.3***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 5.0E-24 | 126 | 168 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 7.2E-51 | 126 | 277 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.1E-23 | 229 | 276 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MSMLGLRDLL LIAPTPSSIH HHQQQQNQNQ PISTDQNSNH PLPSPSSLSV GFGIFPLLTT 60 TPCIPQSQNN ESQENPNNNN FWNLRMYQEP KKGVSVINVD DEKINNNKMV VMESEENGVY 120 GSEYRVCEDC GNRAKKDCVF RRCRTCCKGR GYDCCTHLKS TWIPSTRRRE REIEVVGGGG 180 DGVAKRLKSL IGSSQNVSAN SHSSNSNATT PKSFATSSCH QDAGFKETLP GHVQAPAVFK 240 CHRVTAIGNG EDEFAYLATV HISGHVFKGF LYDHGVDGKN AMHCVSELQL GNNCSGKNGE 300 CSSAIGVPTN INTYPASAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 187 | RRREREIEVVGGGGDGVAKRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498694.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU570763 | 3e-92 | CU570763.5 M.truncatula DNA sequence from clone MTH2-172G19 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498694.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A1S2Y3B9 | 0.0 | A0A1S2Y3B9_CICAR; protein LATERAL ROOT PRIMORDIUM 1-like | ||||
STRING | XP_004498694.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-45 | Lateral root primordium (LRP) protein-related |