PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004498689.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 342aa MW: 38597.2 Da PI: 9.6352

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.1	7.3e-16	39	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++++ s +p++++l+ XP_004498689.1 39 EWSEGAVSTLLEAYESKWILRNRAKLKGQDWEDVAKYVssrsNSTKSPKTQTQCKNKIESMKKRYRSESATSES------SAWPLYSRLD 122 5***********************************98777778889999*************9999986......5799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.4E-19	37	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MNEKIETKDH NPQILNPKEE SPRKHIIIGS GGERLKRDEW SEGAVSTLLE AYESKWILRN 60 RAKLKGQDWE DVAKYVSSRS NSTKSPKTQT QCKNKIESMK KRYRSESATS ESSAWPLYSR 120 LDLLLRGTGQ LCSTIPTQHV TTTPSQLQHV SNNNNNNNNN QGLVLLEPSL VVSQGIEEGH 180 QPLAPNLVSN PLPTIAQNSN GSNGVDKLIK EDELETKSSD HVANKNPQDT DSSTPALYSE 240 KDERKCNKRR KKTENNNNRQ KKEAMGIAES IRWLAEVVVR SEQTRMDTLK EIEKMRVEAE 300 AKRGEMEIKR TEIIANTQLE IARIFANVNN KGVDSSLRIG RS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MNEKIETKDH NPQILNPKEE SPRKHIIIGS GGERLKRDEW SEGAVSTLLE AYESKWILRN  60
RAKLKGQDWE DVAKYVSSRS NSTKSPKTQT QCKNKIESMK KRYRSESATS ESSAWPLYSR  120
LDLLLRGTGQ LCSTIPTQHV TTTPSQLQHV SNNNNNNNNN QGLVLLEPSL VVSQGIEEGH  180
QPLAPNLVSN PLPTIAQNSN GSNGVDKLIK EDELETKSSD HVANKNPQDT DSSTPALYSE  240
KDERKCNKRR KKTENNNNRQ KKEAMGIAES IRWLAEVVVR SEQTRMDTLK EIEKMRVEAE  300
AKRGEMEIKR TEIIANTQLE IARIFANVNN KGVDSSLRIG RS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498689.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC126006	1e-117	AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
GenBank	BT147422	1e-117	BT147422.1 Medicago truncatula clone JCVI-FLMt-14I11 unknown mRNA.
GenBank	CR956402	1e-117	CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498689.1	0.0	trihelix transcription factor ASIL2 isoform X1
TrEMBL	A0A1S2Y4I5	0.0	A0A1S2Y4I5_CICAR; trihelix transcription factor ASIL2 isoform X1
STRING	XP_004498689.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-95	sequence-specific DNA binding transcription factors