PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498480.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 1011aa    MW: 111503 Da    PI: 5.0245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-183884148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_004498480.1 38 KGQWTPEEDETLRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84
                     799****************************9.************986 PP
2Myb_DNA-binding60.73.2e-1990136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde  +++v+++G+  W+tIa++++ gR +kqc++rw+++l
   XP_004498480.1  90 KGPWSKEEDEVMIELVNKYGPTKWSTIAQHLP-GRIGKQCRERWHNHL 136
                      79******************************.*************97 PP
3Myb_DNA-binding48.22.6e-15142184145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_004498480.1 142 KEAWTQEEELTLIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 184
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8963384IPR017930Myb domain
SuperFamilySSF466896.1E-193699IPR009057Homeodomain-like
SMARTSM007173.2E-153786IPR001005SANT/Myb domain
PfamPF002493.5E-163884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-223995IPR009057Homeodomain-like
CDDcd001675.65E-144184No hitNo description
PROSITE profilePS5129431.50785140IPR017930Myb domain
SuperFamilySSF466892.25E-3187183IPR009057Homeodomain-like
SMARTSM007174.2E-1789138IPR001005SANT/Myb domain
PfamPF002491.6E-1790136IPR001005SANT/Myb domain
CDDcd001672.06E-1592136No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2796144IPR009057Homeodomain-like
PROSITE profilePS5129419.205141191IPR017930Myb domain
SMARTSM007171.4E-14141189IPR001005SANT/Myb domain
PfamPF002491.5E-13142185IPR001005SANT/Myb domain
CDDcd001672.60E-11144184No hitNo description
Gene3DG3DSA:1.10.10.604.9E-21145191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
MDGDRKIAVP PVDGPTDGVQ KIRALHGRTT GPTRRSTKGQ WTPEEDETLR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEV MIELVNKYGP TKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LTLIRAHQIY GNKWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYMASGLL TQLQSVPHGG NPSQSMVTTS SRSQGNGEDN GLQGTEGDEV  240
LECSHDSANA LHFPSSREMT GADLQTVEGF KPNEECSLGT GRSPSQASCS EPYYVSIDDV  300
TICIPETAHH EACSSEFIEQ YSHEPGNSMN EDCQFNLHSL PNISSMDLGE ESSQLQRDGT  360
DPSGVRDLVN VPYQTSAGLA VSTPMESTSM GSAKPEHMLI SDDECCRVLF SEANNDECFF  420
PGDYNKGVDT IEFNGHTAYV CQSCHIQISE TGGTSTMQLT CPQCSNNFKG MSFSQSTQPL  480
HSTNDSGREC QQFVSRAPDN FTYANDMSSS PCVDATESSV MQEPSDILKD SFIRGPDVKQ  540
TCYPTDEKPN VGTNKEDERA LCYEPPRYPS LDVPFFSCDL VQSGGDMQQE FSPLGIRQFM  600
MSSMNCLTPL RLWDSPARDD SPEALLKSAA KTFTGTPSIL KKRRRDLLSP LSDKRIGKKL  660
ETDMASSLAK AFSSLEADIL SPSLLQKPNS GASGFDDDKE NCEQAYKGKQ VEEAVKSSAI  720
LEEKQSDALD SNSHGKVRQQ PFDVDSKMKI DAAEIMLQSS GVLSEHDMND LSLYSSDKVG  780
FRDRVLGSSD GTPRNLNNRS SEIALNQSVP SKLSSEKSCS RISTPCIRAK EHENLTVSVA  840
RVKAPGENSE DQSRNDGGYE TCSMFGGTPF RKGIESPSAW KSPWLRNTFL CSPSFDKEIT  900
IEDFGFFKSP GGDRSYDAIG LLKQIGDQTV ATYENAQENL KNETPKALPK DATGDQGNNS  960
PSNQPANNSK LSSNAMLNGI FSHQVERRML DFSECGTPEK GDSSKSSASQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-69381916159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-69381916159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498480.10.0transcription factor MYB3R-1-like isoform X1
TrEMBLA0A1S2Y4N50.0A0A1S2Y4N5_CICAR; transcription factor MYB3R-1-like isoform X1
STRINGXP_004498480.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein