PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498462.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 347aa    MW: 38518.7 Da    PI: 6.7831
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18239273135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_004498462.1 239 CLHCATDKTPQWRTGPKGPKTLCNACGVRYKSGRL 273
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-7914329IPR016679Transcription factor, GATA, plant
SMARTSM004016.6E-17233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347233269IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-15234297No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14235270IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-13238285No hitNo description
PfamPF003206.1E-16239273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGTSNFFQT TFCQQQLSSD NNQTNNTTST TTTADQFIVE DLLNLSNDDV IIAETNLDAA  60
IGTSTNSSTI INSCNSSFSG CDHNLVHDIG GHNLSDCHFS GDLCVPNDDL AELEWLSNFV  120
EESFSSEDLQ KLQLISGKKV GSKDEEVHEF SQPNRNNPIF NKEVSVPAKA RSKRTRGPPC  180
DWSSRLLVLS ETASSSSESE LLIPTPTLPS TTVLPKKQKT ASRRKDNGDG GSGGDGRRCL  240
HCATDKTPQW RTGPKGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH SNSHRKVLEL  300
RRQKEMVRAH QHHQHQFLHH QNMIFDISNS DEYLIHQPVG PDFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498462.10.0GATA transcription factor 12-like
SwissprotP697818e-94GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1S2Y4M00.0A0A1S2Y4M0_CICAR; GATA transcription factor
STRINGXP_004498462.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-68GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]