PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 360aa MW: 41600.4 Da PI: 8.0728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 19 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C++Cg + s k + ++Hi++ H XP_004498336.1 19 YYCQYCGICRSKKTLITSHINSvH 42 89*******************988 PP | |||||||
2 | zf-C2H2 | 20.1 | 1.7e-06 | 65 | 86 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +L +H+++H XP_004498336.1 65 TCEECGASFKKPAYLLQHMQSH 86 6*******************99 PP | |||||||
3 | zf-C2H2 | 19.2 | 3.3e-06 | 92 | 116 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ s++rk++L+rH+ H XP_004498336.1 92 YVCSleDCNASYRRKDHLNRHLLQH 116 99*******************9887 PP | |||||||
4 | zf-C2H2 | 17.9 | 8.3e-06 | 121 | 146 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ Fs +snLkrHi H XP_004498336.1 121 FKCPieNCKSDFSLQSNLKRHIDEiH 146 89********************8877 PP | |||||||
5 | zf-C2H2 | 21.6 | 5.5e-07 | 161 | 185 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s+L++H +H XP_004498336.1 161 FVCPeiGCGKVFRYASQLQKHEDSH 185 89*******************9888 PP | |||||||
6 | zf-C2H2 | 17.3 | 1.3e-05 | 251 | 276 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+ +Fs+ksnL++H + H XP_004498336.1 251 FQCEfeGCDCTFSTKSNLHTHEKAvH 276 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.787 | 19 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 26 | 19 | 42 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.44E-11 | 63 | 116 | No hit | No description |
PROSITE profile | PS50157 | 13.318 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.3E-9 | 65 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 92 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 92 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-10 | 92 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.11E-6 | 102 | 147 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-6 | 119 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.118 | 121 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 121 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 123 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-8 | 155 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.39E-5 | 157 | 187 | No hit | No description |
SMART | SM00355 | 4.6E-4 | 161 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 161 | 190 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 193 | 218 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 195 | 218 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 35 | 221 | 242 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.4E-8 | 232 | 273 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.08E-9 | 232 | 290 | No hit | No description |
SMART | SM00355 | 0.0064 | 251 | 276 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.133 | 251 | 281 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 253 | 276 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.3E-5 | 275 | 305 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.9 | 282 | 308 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 284 | 308 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEEAMLSDEL PKFRDIRRYY CQYCGICRSK KTLITSHINS VHKEEVEKTR VEAEAETEGV 60 LKANTCEECG ASFKKPAYLL QHMQSHSLER PYVCSLEDCN ASYRRKDHLN RHLLQHKGKT 120 FKCPIENCKS DFSLQSNLKR HIDEIHDENS TSVSSENQKQ FVCPEIGCGK VFRYASQLQK 180 HEDSHVKLET IDVVCLEPGC MKHFTNAECL KAHVKSCHQH MTCETCGSKQ LKKNMKRHLR 240 THEASSPSKV FQCEFEGCDC TFSTKSNLHT HEKAVHIQVK PFVCGFPDCG MRFAYKHVRD 300 NHEKTGKHVF TLGDFEEADE LFRLRPRGGS KRKCPTVEML VRKRVTPPSH LENLFMQESE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-15 | 53 | 305 | 11 | 184 | Aart |
2i13_B | 3e-15 | 53 | 305 | 11 | 184 | Aart |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 236 | LKKNMKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498336.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122163 | 4e-95 | AC122163.20 Medicago truncatula clone mth2-16l2, complete sequence. | |||
GenBank | AC126006 | 4e-95 | AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498336.1 | 0.0 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-148 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A1S2Y2L6 | 0.0 | A0A1S2Y2L6_CICAR; transcription factor IIIA | ||||
STRING | XP_004498336.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-151 | transcription factor IIIA |