PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498242.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARR-B
Protein Properties Length: 635aa    MW: 69831.4 Da    PI: 7.3769
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-28212265155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_004498242.1 212 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 265
                     79*******************.********************************8 PP
2Response_reg69.71.3e-23281361109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++++++  + +y +v+++++++ al++l+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++  +  +++ + ++ G
  XP_004498242.1  28 VLVVDDDVTTLKIIERMSLRCHY-RVTTCSEATVALNILRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSVDDRTSTVMKGIRHG 120
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d++ Kp+ +eel++
  XP_004498242.1 121 ACDYFIKPVREEELRN 136
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.1E-1546629IPR017053Response regulator B-type, plant
SuperFamilySSF521728.97E-3225148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-3825160No hitNo description
SMARTSM004488.7E-2826138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.91727142IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2028137IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.85E-2429142No hitNo description
Gene3DG3DSA:1.10.10.608.3E-30209270IPR009057Homeodomain-like
PROSITE profilePS5129410.504209268IPR017930Myb domain
SuperFamilySSF466891.7E-19209269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24212265IPR006447Myb domain, plants
PfamPF002492.4E-7214263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MPASLQKMAH SSSKSDSAAA QFPAGLRVLV VDDDVTTLKI IERMSLRCHY RVTTCSEATV  60
ALNILRERKG CFDVVLSDVH MPDMDGYKLL EHVGLEMDLP VIMMSVDDRT STVMKGIRHG  120
ACDYFIKPVR EEELRNIWQH VARKFLNESK EHDNSGYIED NDRNKQGNDD NDNTSSVAGA  180
TKGIIKEPKK RSNIKDEEDV ELENDDPSTS KKPRVVWSVE LHQQFVSAVN QLGLDKAVPK  240
RILELMNVPG LTRENVASHL QKFRLYLKRL SGVAQQQNGM LNTVPGTIES KLAATGRYDI  300
QTLAASGHVS PETLAALHAE FLGRPVTNIM STIDHTALMQ ASVQGPKHSR ADDHAVAYGQ  360
PLVKCASNIV GNFPQPILTV DDTSSRYGAW PPTNTLGSVS SGRRLGVQNN NMHIDILQHQ  420
QKHQHQQKQQ QSLIHDQNRS INVQPSCLVV AAQSSDTFQA VNSVTSVIKD SSFGRNAING  480
YSHSSQKLNN SSSTSQYPGG DTKATSISPQ ASCFSVGSSN SNIQQIQNST STFGAMRPLP  540
SLLPVTFRQV PNDINSSDSL DQVCLRNLGF VGKGTCIPSF ENKIESSASD FSQMKVFMAS  600
NGNTVKEEPN LIRYPNVSHL VLQNYPSHDH SSAFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21208271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-84AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498241.10.0two-component response regulator ORR21
RefseqXP_004498242.10.0two-component response regulator ORR21
SwissprotQ8H7S71e-147ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1S2Y2A20.0A0A1S2Y2A2_CICAR; Two-component response regulator
STRINGXP_004498241.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-107response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]