PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498233.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 409aa    MW: 47439.4 Da    PI: 10.1467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.2e-12185262786
                     .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     +  + + ++l lp +f +++  +   ++s    ++  + r W+v++ +++  +r + tkGW+ F+k+ +L++gD + F++++
  XP_004498233.1 185 SRTYAQGHLLGLPSDFSRKYlnE--FKGS--GNIRVGEDRAWKVNFYFDGVNRRSIVTKGWRLFAKEYNLQVGDKCKFEMTQ 262
                     4455566889**********642..3343..45667889*******99999999999**********************754 PP
2B341.13.2e-133264031698
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +l+++f+++++  +  +k l+l+  +g+sW+vk+  ++++++  l +GW++F + n+L+ gD++v++l+++++f + v++ r
  XP_004498233.1 326 PYLSNEFLKTFSDCH--GKFLKLK-VKGKSWNVKV--SNYPKSGRLYAGWSQFKEGNKLEFGDICVLELIDEKKFVFEVSIER 403
                     567777776664332..2235544.599*******..7777777799***********************99**988888866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.54E-7796No hitNo description
SuperFamilySSF1019361.86E-12898IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-11898IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0079999IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-16174271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-16174272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-13178274No hitNo description
PROSITE profilePS5086311.787179276IPR003340B3 DNA binding domain
SMARTSM010191.9E-4180276IPR003340B3 DNA binding domain
PfamPF023621.6E-9186262IPR003340B3 DNA binding domain
PROSITE profilePS5086310.447311405IPR003340B3 DNA binding domain
SMARTSM010196.3E-6316405IPR003340B3 DNA binding domain
CDDcd100176.30E-11317403No hitNo description
SuperFamilySSF1019362.75E-13320403IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-14322403IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-10325404IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSFNFSREFF KIMQNGELHN GELKVPKSFV KLHWKEVSNP LFLTLPNGTK HEICWVERKG  60
DIWFQNKWGN FAKCLKYGHL LIFKYLGGPY FKVKIFGDNN IEIDYSNIKS VDEVGEAKEG  120
SDDSETLTQT RRTKNGKKKV NVDFDSTHKK ISGNNRGGMT KKAKRWPTVE AVNERENPSF  180
ELTMSRTYAQ GHLLGLPSDF SRKYLNEFKG SGNIRVGEDR AWKVNFYFDG VNRRSIVTKG  240
WRLFAKEYNL QVGDKCKFEM TQLKPPSFTI TINKLQGISS YDDIAKRKAI KGTSWSYLKI  300
KDFENLEGAI MMKQNTFKVY VNSSYPYLSN EFLKTFSDCH GKFLKLKVKG KSWNVKVSNY  360
PKSGRLYAGW SQFKEGNKLE FGDICVLELI DEKKFVFEVS IERKHHYGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498233.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S2Y2C90.0A0A1S2Y2C9_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004498233.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein