PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498205.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 566aa    MW: 63428 Da    PI: 8.5644
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C k F r  nL+ H r H
  XP_004498205.1 69 FVCEVCQKGFQREQNLQLHRRGH 91
                    89*******************88 PP
2zf-C2H212.60.00043146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_004498205.1 146 WKCEKCSKKYAVQSDWKAHSKTC 168
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-66891No hitNo description
SMARTSM003550.00776991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8036991IPR007087Zinc finger, C2H2
PfamPF121717.1E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355120111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-6141166No hitNo description
SMARTSM00355140146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MAASSSSTPF LEIRQEIHQS QITQNQSSTA ASSSTVLPQK KRRNQPGTPY PDAEVIALSP  60
KTLMATNRFV CEVCQKGFQR EQNLQLHRRG HNLPWKLKQK SNNKEAKRKV YLCPEATCVH  120
HDPSRALGDL TGIKKHYYRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAHE NSRHPSNMNP LGGTHHHHLF ATNHMSLGLS QLTSQLHHQN  240
QNQNQQPTTN NILTLGGGPN PTCTPKYEHL ISHPSSSSFG QQQSPQSPFF INDHHHPNQT  300
FQDLQSHQTL PFSNKQQQQL HLHGLMQLSH DLQGPNNNNT NSSSSLSPFN LSFFPNNNSN  360
TMNDQFNNNI SESEATTLFT NTHNHHGSSF SSIFANSSMQ QQENMSLSSP HMSATALLQK  420
AAQIGSTTTT NGVESNQTLA TYGNDDHSRR DQGIIRTISM ENDQHHHEHL HGLMNSSIYG  480
NHDNNIAQFH NVEEAKKMSQ QNLGDLCFGG SDKLTLDFLG VGGMVRNMSS STSGGGFSQR  540
DQQLHSISNI NNMDPKLEST QPNQPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34142209370Zinc finger protein JACKDAW
5b3h_F4e-34142209370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498204.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_004498205.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A1S2Y4150.0A0A1S2Y415_CICAR; protein indeterminate-domain 5, chloroplastic-like isoform X1
STRINGXP_004498204.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.14e-99indeterminate(ID)-domain 4