PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 434aa MW: 49413.7 Da PI: 8.8797 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 14 | 96 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l+s++l++p +f++++g + s tl+ ++g +W++ l +k ++r+++ +GW++Fv+ + g f+vF+++g+s+f v++f+ XP_004498177.1 14 TLQSRQLRIPDNFLRKYGAQ--LSAIATLTVPDGTVWRLGL--KKVDNRIWFVDGWQDFVQRYSIGIGYFLVFMYEGSSSF--IVHIFN 96 455667***********977..8999***************..*********************************99999..999986 PP | |||||||
2 | B3 | 61.1 | 1.8e-19 | 303 | 393 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l ++++ l v++f XP_004498177.1 303 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTPDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLRTRDVVLQVTLF 392 78899******************877743...5***************665555..66***********************99999988999998 PP - CS B3 98 r 98 r XP_004498177.1 393 R 393 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-21 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-18 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.971 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 14 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-24 | 292 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-25 | 293 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-23 | 298 | 393 | No hit | No description |
SMART | SM01019 | 2.1E-21 | 300 | 395 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.339 | 300 | 395 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-18 | 303 | 393 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MPRPSFHKLI LPITLQSRQL RIPDNFLRKY GAQLSAIATL TVPDGTVWRL GLKKVDNRIW 60 FVDGWQDFVQ RYSIGIGYFL VFMYEGSSSF IVHIFNMSTS ELNYQSAMRS RNEGPCYPNY 120 HHIFDEMEDV DSFDFLDSSP SNLTPGALQD KVFAGSIDQL SQGKNHTPSL QNLFNGGSKL 180 NRVNWGDIGG ALSSKSPNQS TRDIGVQFNA VEFKKSTEEL KLRYPNEEGV NNNSSNKPAR 240 KKRKSELKDA QEPSGDNEDE AEMRYRFYES ASARKRTVTA EERERAINDA KAFEPSNPFC 300 RVVLRPSYLY RGCIMYLPSC FAEKNLNGVS GFIKLQTPDG RQWPVRCLYR GGRAKLSQGW 360 YEFTLENNLG EGDVCVFELL RTRDVVLQVT LFRVAEDESG LFNPSMQPNQ NVSHAKLLNP 420 HLQHRISTTK SVKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-73 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-73 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498177.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-124 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A1S2Y252 | 0.0 | A0A1S2Y252_CICAR; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_004498177.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-127 | B3 family protein |
Publications ? help Back to Top | |||
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