PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498126.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28496.5 Da PI: 7.3477 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++ rqvtfskRr+g++KK +ELSvLCda++ +iifsstgkl+ yss XP_004498126.1 9 KRIQNTTTRQVTFSKRRTGLIKKTHELSVLCDAQIGLIIFSSTGKLFQYSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.104 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.76E-41 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-31 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-17 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.546 | 88 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGKIEIKR IQNTTTRQVT FSKRRTGLIK KTHELSVLCD AQIGLIIFSS TGKLFQYSSE 60 PYRMDQIIEK YQRSTGKRIM VESDHHYREE MFHDMAMLRQ ESIRVELGIQ RYLGSDMNGL 120 KYDDLTKLEE ELEFSLAKVR NRQNELLSQQ MENLRRKERI LEDEHINLSN WEQRAVMEFH 180 KAAIEANKQQ QNGMDEFAFF EDQPAGTILQ LAAPVLPLHL HPYLQLAQPN IHQDSLPSRD 240 PKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-22 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 4e-22 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 4e-22 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 4e-22 | 1 | 71 | 1 | 69 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498126.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498126.1 | 0.0 | protein TRANSPARENT TESTA 16 | ||||
Refseq | XP_027189883.1 | 0.0 | protein TRANSPARENT TESTA 16 | ||||
TrEMBL | A0A1S2Y205 | 0.0 | A0A1S2Y205_CICAR; protein TRANSPARENT TESTA 16 | ||||
STRING | XP_004498126.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-63 | MIKC_MADS family protein |