PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 226aa MW: 24443.3 Da PI: 9.7933 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.4 | 1e-37 | 26 | 188 | 2 | 122 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++ + + XP_004498111.1 26 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFH-----Ppspfilgk 115 689*************************************************************88888666211111111.....122344455 PP TCP 89 ........................................kaaksaa.kskksqksaasalnlakesrakarara 122 ++ +s+ + +++q++++ + ++++++++++ +a XP_004498111.1 116 rlrseqddavsvaaptappalwalpsrpdfaqlwsfaaaaAQPPSEVlSISPQQQQHN--SLFHHQQQQQQQHQA 188 5555555666677778888888888888888888888886333333323333333333..333333333333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 32 | 86 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.7E-33 | 32 | 186 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSNCKETTNA VTVTNGTTTD SQKTIAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSSLS EHKPFHPPSP FILGKRLRSE 120 QDDAVSVAAP TAPPALWALP SRPDFAQLWS FAAAAAQPPS EVLSISPQQQ QHNSLFHHQQ 180 QQQQQHQASM GEASAARLGN YLPGHLNLLA SLSGNGNSGR GDDEHH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498111.1 | 1e-167 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 1e-79 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1S2Y206 | 1e-166 | A0A1S2Y206_CICAR; transcription factor TCP7-like | ||||
STRING | XP_004498111.1 | 1e-166 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-50 | TCP family protein |