PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498051.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 280aa    MW: 31930.3 Da    PI: 9.0682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000873456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C+ksFs+   L  H  +H
  XP_004498051.1 34 FICDLCDKSFSSGNALGGHKASH 56
                    89*********999998888777 PP
2zf-C2H216.32.8e-0591113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C+k+F+++  L  H+r+H
  XP_004498051.1  91 HACVLCHKVFPSNKALYGHMRSH 113
                     67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-42157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-53059No hitNo description
PfamPF139124.9E-113457IPR007087Zinc finger, C2H2
SMARTSM003550.153456IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9933461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
SuperFamilySSF576675.43E-589116No hitNo description
PfamPF139122.3E-691115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4591118IPR007087Zinc finger, C2H2
SMARTSM003550.01791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKRFCHSFHK TEKHDDYVWP LLAHEMKKNG SRIFICDLCD KSFSSGNALG GHKASHNRSD  60
LLQPPIKKHK LTIDSCSLSS PNDHDDVKHK HACVLCHKVF PSNKALYGHM RSHSQKDSKA  120
IQPPLITTTS RDSKIQSNNT DDQPILPAID LEKYFPPRSH QTKKRCSKST IDYELINVAQ  180
ILCDMSRSDP TKFTTNIDNQ RNKEHVTIVK NNNNPKKLVV TFKIPKDKTF KIPKDKEEKN  240
KEAEMEKESS HQLGSRAVAK DFDLNEIPVD LDLVADEQAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498051.10.0protein odd-skipped-like
TrEMBLA0A1S2Y1W20.0A0A1S2Y1W2_CICAR; protein odd-skipped-like
STRINGXP_004498051.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-12C2H2 family protein