PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497904.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 435aa MW: 49267 Da PI: 6.5063

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	266	320	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_004497904.1 266 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRI 320 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.78E-17	264	320	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-28	265	321	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.036	265	323	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.3E-23	266	321	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-8	270	319	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-20	350	396	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MNDNKIDCLG RIQQNHRLNG DFNYELGNCS SSSQYFDMRH VSSNIGNFSQ PFSMSCVGEM 60 EDPSCIIQSQ NQGQGKSSST IISRFESPNS AFYATEICMN FPQYDSQVGN DSNPFLISQF 120 SKVNDLEFPL YQCPRENIFL DSTNQANTNF EFSNSNPLQP MMRSQLNSDQ CIRSPENSNK 180 ILSGNFHSVE QHKFFIDDAA SISMSPLIPS KGNQDHKVSC GSYDMPVSQL NFSYQQEKLS 240 PTISTGNLST ICGNYPASNG SSVCSKTRIR WTQDLHEKFV ECVNRLGGAE KATPKAILRL 300 MESDGLTIFH VKSHLQKYRI AKYMPESTQG KSEKRTNVEN VHLDVKSGLQ IREALQLQLD 360 VQRRLHEQLE IQRKLQLRIE EQGKQLKMMF DQQQKTNTQN LDNTENNNNK PISPKDIEVS 420 ILEGSENSLF PSKIS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MNDNKIDCLG RIQQNHRLNG DFNYELGNCS SSSQYFDMRH VSSNIGNFSQ PFSMSCVGEM  60
EDPSCIIQSQ NQGQGKSSST IISRFESPNS AFYATEICMN FPQYDSQVGN DSNPFLISQF  120
SKVNDLEFPL YQCPRENIFL DSTNQANTNF EFSNSNPLQP MMRSQLNSDQ CIRSPENSNK  180
ILSGNFHSVE QHKFFIDDAA SISMSPLIPS KGNQDHKVSC GSYDMPVSQL NFSYQQEKLS  240
PTISTGNLST ICGNYPASNG SSVCSKTRIR WTQDLHEKFV ECVNRLGGAE KATPKAILRL  300
MESDGLTIFH VKSHLQKYRI AKYMPESTQG KSEKRTNVEN VHLDVKSGLQ IREALQLQLD  360
VQRRLHEQLE IQRKLQLRIE EQGKQLKMMF DQQQKTNTQN LDNTENNNNK PISPKDIEVS  420
ILEGSENSLF PSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	266	323	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	266	323	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	266	323	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	266	323	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497904.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497904.1	0.0	protein PHR1-LIKE 1-like
TrEMBL	A0A1S2Y1L3	0.0	A0A1S2Y1L3_CICAR; protein PHR1-LIKE 1-like
STRING	XP_004497904.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-72	G2-like family protein