PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 301aa MW: 31825.3 Da PI: 9.9072 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.8e-07 | 103 | 128 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ XP_004497899.1 103 KSRICNKFNSAEGCKFGDKCHFAHGE 128 5689999999999***********96 PP | |||||||
2 | zf-CCCH | 36.3 | 9.1e-12 | 269 | 292 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +fa+ G C +G+rC+FaHg XP_004497899.1 269 KTKLCENFAK-GSCTFGERCHFAHG 292 8*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.5 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.836 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.4 | 39 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-13 | 99 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-7 | 100 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-5 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.1370.10 | 3.3E-15 | 172 | 241 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.6E-11 | 172 | 242 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.837 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.1E-10 | 175 | 238 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.15E-13 | 175 | 269 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 9.52E-14 | 175 | 238 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-16 | 262 | 298 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 267 | 297 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 269 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDVRKRGRLE ATVNVNGSFK KNKQEMDLLS SGVGSKSKPC TKFFSIAGCP FGEGCHFLHY 60 VPGGYNAVAQ MMNLKSSAAP QLSRNVVAPP PVANNGSAPS AVKSRICNKF NSAEGCKFGD 120 KCHFAHGEWE LGKPFAPSID DHHRPMAPIT VGRVPGRIEA PSGLAATTSF GVNSTAKISV 180 EASLAGAIIG KGGVHSKQIC RQTGVKFSIR DHESDPNLRN IELEGTFDQI AQASNMVKDL 240 LLTLSASAPP KSNSGVPGSG PPPPGRNIKT KLCENFAKGS CTFGERCHFA HGASELRKLG 300 I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497899.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497899.1 | 0.0 | zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q7F8R0 | 1e-103 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S2Y3F9 | 0.0 | A0A1S2Y3F9_CICAR; zinc finger CCCH domain-containing protein 44-like | ||||
STRING | XP_004497899.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-82 | C3H family protein |