PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497762.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 331aa    MW: 39285.2 Da    PI: 4.9558
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-1712100296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fkv+         r+ +p  f++ + +k++  k++tl+d +gr+W vk   r  + + ++++GWk+F ++n L+e Df+vF++++++ f  ++k+
  XP_004497762.1  12 FKVF--LLEKHYERMQIPDAFVNLMCLKTRLMKDVTLRDHRGREWHVKT--RSVGAKLYFADGWKRFREQNCLEESDFIVFTHVENNVF--KFKI 100
                     5555..334455789*******8888999999*****************..999999*************************9998888..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-195102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-177102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-159101No hitNo description
PROSITE profilePS5086313.1979104IPR003340B3 DNA binding domain
SMARTSM010191.1E-1111104IPR003340B3 DNA binding domain
PfamPF023622.0E-1411100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-6217329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-7225329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.611289331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTNVTKEYPD FFKVFLLEKH YERMQIPDAF VNLMCLKTRL MKDVTLRDHR GREWHVKTRS  60
VGAKLYFADG WKRFREQNCL EESDFIVFTH VENNVFKFKI LELASMCEKI KVMEVDNNVM  120
EEEDDGDANG DDDDDDDDYD DDNDDDDDDV MMIEHDDDDD PEEEIEAVKG NIRNQPQHLR  180
TCKARDIESS SKHSKHEDDE FDAEIYVQEG NPYFVVKQSH NRPNEISIPK NTIKDFCLCF  240
TKHIPLVCCH CKGVQKRDIE AYHFVLPQIS TEHIKKRGEI RRWKDGRVLV QGWEGFCRKS  300
KIKENDRCIC ELVLREDKTI EMLRVHVIRR K
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189373.10.0B3 domain-containing protein REM20-like
TrEMBLA0A3Q7XPX90.0A0A3Q7XPX9_CICAR; B3 domain-containing protein REM20-like
STRINGXP_004497762.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-12B3 family protein