PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497643.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YA

Protein Properties

Length: 335aa MW: 36838.3 Da PI: 9.3968

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.8	2.3e-30	167	222	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p YVNaKQy++I++RRq+Rak+ ++kl +k kpy+heSRh hA+rRpRg+gGrF XP_004497643.1 167 GPTYVNAKQYHGIIRRRQSRAKAVLQNKL-IKRSKPYMHESRHLHAMRRPRGCGGRF 222 79*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.6E-34	164	225	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.212	165	225	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-21	168	190	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-25	168	222	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-21	199	222	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAMQNVYLRE HEGTFHNSVG QYSSVNSAPW WNNAFGSSQS VYGGDQSCGQ MKPFSLELSN 60 YIDQLGPSKH LGRGVEQLLD KGHTNQFTIF PDDCKMLGDA QNHQATLSLQ SSFAVTEPHN 120 RFELGFNQSM ICAKYPYMDQ FYGLFSTYGP QISGRIMLPL SLASDDGPTY VNAKQYHGII 180 RRRQSRAKAV LQNKLIKRSK PYMHESRHLH AMRRPRGCGG RFLNTKVSAI GNGKSGSEVK 240 QKTGGLQLQS SGSQSSEVLQ SEVGTLNSSK ETNGGSPNVS GSEVTSMYSQ GGLDSFAVNH 300 IRSSVHSLGD MMDTEHGIVM PTKWFAAAGR QLLQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-16	168	226	4	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497643.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570383.2	0.0	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-10
TrEMBL	A0A1S3E4M3	0.0	A0A1S3E4M3_CICAR; LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-10
STRING	XP_004497643.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	5e-50	nuclear factor Y, subunit A10