PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497606.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 501aa MW: 58727.9 Da PI: 6.723

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.3	1.2e-29	122	207	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+ + +++++f+qlea XP_004497606.1 122 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFFRQLEA 207 8*********************************998***************************985..5557*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.131	115	180	IPR017877	Myb-like domain
CDD	cd12203	2.17E-19	122	187	No hit	No description
Pfam	PF13837	9.0E-20	122	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MKMEDHHNNH GHHHHHHHQQ QQYGDITTDL RQLVNGTRFP SSEEFFPGHR NLTALVTPQQ 60 QQQYEMMMLG HRGVVLEDFN TSMNTIVPPP LPPTTTTTTT TSVSVSTPET AGCIGGDAST 120 GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMC EEHGYQRSGK KCREKFENLY 180 KYYKKTKEGK AGRHDGKHYR FFRQLEALYG ENSNTTCLPE TNFVNNFNFQ KNQEIFHHNN 240 NINNSNNKNI CDDHSLSLTN STDFDTSSCD DDDNDQSNDK RRKRKSGRRS WKVKIKEFID 300 SQMKKLVEKQ EEWLSKLVKT LEEKEKERVL RDEEWRKQEV KRVEREQKFW ANERAWIEAR 360 DAALMEALKN INGREMLMKV EDHDHDEGVI MESHHEIQNN IEKMNEAESE EGNKKRKEKT 420 RSCFYFDNNE QSSMYNNQGS TYCDVNDQQR EESIVKLQRN IDHDGTSPSN SNVGSFPFLI 480 SEGGNLWENF GLKINKENQN H

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MKMEDHHNNH GHHHHHHHQQ QQYGDITTDL RQLVNGTRFP SSEEFFPGHR NLTALVTPQQ  60
QQQYEMMMLG HRGVVLEDFN TSMNTIVPPP LPPTTTTTTT TSVSVSTPET AGCIGGDAST  120
GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMC EEHGYQRSGK KCREKFENLY  180
KYYKKTKEGK AGRHDGKHYR FFRQLEALYG ENSNTTCLPE TNFVNNFNFQ KNQEIFHHNN  240
NINNSNNKNI CDDHSLSLTN STDFDTSSCD DDDNDQSNDK RRKRKSGRRS WKVKIKEFID  300
SQMKKLVEKQ EEWLSKLVKT LEEKEKERVL RDEEWRKQEV KRVEREQKFW ANERAWIEAR  360
DAALMEALKN INGREMLMKV EDHDHDEGVI MESHHEIQNN IEKMNEAESE EGNKKRKEKT  420
RSCFYFDNNE QSSMYNNQGS TYCDVNDQQR EESIVKLQRN IDHDGTSPSN SNVGSFPFLI  480
SEGGNLWENF GLKINKENQN H

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497606.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	5e-46	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497606.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	4e-92	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A1S2Y2U1	0.0	A0A1S2Y2U1_CICAR; trihelix transcription factor PTL-like
STRING	XP_004497606.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	7e-75	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]