PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 498aa MW: 54513 Da PI: 6.7517 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.7 | 8.7e-20 | 118 | 205 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ r + ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+q+e+ XP_004497592.1 118 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMNNG-CISTSHWPWFKQMEH 205 5*************************************666677899*************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.9E-20 | 116 | 206 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 1.8E-69 | 255 | 491 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.958 | 257 | 492 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 1.28E-56 | 258 | 491 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 2.06E-107 | 260 | 492 | No hit | No description |
Pfam | PF00696 | 1.8E-25 | 261 | 471 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MASCDDDDDF SILRDDNPHS HHLHQTFAPH HHHHHHHFST ASVQPKPVAD DDTDDYGNPF 60 DDDAGSEKRK DRDEIGDGTT SYGFNKRSKS VSSGNGGVSV GVSIGVGGGA EYRKDREEWS 120 DTAIVCLLEA YTEKFTQLNR GNLRGRDWEE VASVVSERCE NQSKSVEQCK NKVDNLKKRY 180 KLERHRMNNG CISTSHWPWF KQMEHIVGNS LPSKFAEEDK AIVPASNSPR QSKRYGVATS 240 SSGGQVNTLK SKALSNLRWR RVVLKISGAA LTGSDTCNID PKVAMLVSSE VAIASRLGVE 300 VAIVVGGRNF FCGDAWVTAT GLERCTAYQV GMMATVMNSL LLQSTLEKMG VQTRVQTSVS 360 MQEFAEPYNR QRAIRHLEKG RVVIFGGIGF GAGNPLFSTD IASALRASEL NAQAVLKGTN 420 VDGVYDCNSR DNNFTFEHIS FRELVSRGVA TMDMSALTFC EENAIPVVVF NLLAPGNISK 480 ALCGEQVGTL IDQTGALS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek5_B | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek5_C | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek5_D | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek5_E | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek5_F | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek6_A | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek6_B | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek6_C | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek6_D | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek6_E | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
3ek6_F | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497592.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139525 | 1e-108 | AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence. | |||
GenBank | AC146788 | 1e-108 | AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497592.1 | 0.0 | uncharacterized protein LOC101509939 | ||||
TrEMBL | A0A1S2Y266 | 0.0 | A0A1S2Y266_CICAR; uncharacterized protein LOC101509939 | ||||
STRING | XP_004497592.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |