PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497590.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 507aa    MW: 58363.6 Da    PI: 6.3882
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.54.2e-24127228186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                     +Wt+ +v++Li a+ +++++ +++                +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ 
  XP_004497590.1 127 KWTDTMVRLLIMAVYYIGDEAGSEGnnndpmskkkpsgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQ 221
                     7**************9988877542367788889999999**********************************************559****** PP

        trihelix  80 pyfdqle 86 
                      ++d+++
  XP_004497590.1 222 NLLDSMD 228
                     **99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-21125253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEANGIFSNI TTSALLGVVD IPLQQQQQQQ QNLQIQQNPH HLHHSQVVSY VSHHHDTDNN  60
THQQQQLQQP IKHGYPPFSS SNSKIKQQQQ QQSSHSQLSD EDEPNFPAEE SSGGDPKRKI  120
SPWQRMKWTD TMVRLLIMAV YYIGDEAGSE GNNNDPMSKK KPSGLLQKKG KWKSVSRAMM  180
EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG KGTACRVVEN QNLLDSMDLT TKMKEEVRKL  240
LNSKHLFFRE MCAYHNSCGH GSVVASSNVQ QQQVEGGTTT PPPQAQPQQH QQQQLQQQQQ  300
QCFHSSENGL KMLKIGNGEG EEEDDESEDD DSEDDSDEED DESREGGSKN QIGHFNDQDE  360
DENDGKLLTS SRKRARKEGG FAFSMSSLSS STALTSTLMH QMKSEISGVF QDGGKSPWEK  420
KQWIRSKIMM LEEEKVRYLS QEFELEKQRL KWARFSSKKE REMERAKVEN ERRRLENERM  480
VLIIRQKEIE LMSLQQQQQH QQQHSST
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395250.0AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467880.0AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497590.10.0GATA zinc finger domain-containing protein 10
TrEMBLA0A1S2Y2S70.0A0A1S2Y2S7_CICAR; GATA zinc finger domain-containing protein 10
STRINGXP_004497590.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-70sequence-specific DNA binding transcription factors