PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497510.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 692aa    MW: 77443.4 Da    PI: 7.4534
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23130231199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + ++
  XP_004497510.1 130 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADPPLQ-NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFL--RAEN 221
                     89*****************************95455553.7999*********************************************..4488 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+v+++r+
  XP_004497510.1 222 GDLCVGIRRA 231
                     999****997 PP
2Auxin_resp107.81.2e-35296379183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a++k++FevvY+Prast+eF+vk+  ve+a++++++ G Rfkmafetedss++++ +G+v++v+ +dp+ WpnS+Wr+L+
  XP_004497510.1 296 AVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWfMGIVSAVQFVDPLLWPNSPWRLLQ 379
                     67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-36121233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-28124241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-20129230No hitNo description
PfamPF023622.2E-21130231IPR003340B3 DNA binding domain
SMARTSM010193.4E-20130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83130232IPR003340B3 DNA binding domain
PfamPF065074.0E-30296379IPR010525Auxin response factor
PROSITE profilePS5174519.371606686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MNTLMDSREN NNSESVERYL DPQLWHACAG GMVQMPTINS KVYYFPQGHA EHACGHVNFR  60
NCPKVPPLIP CKVVSIKYMA DLESDEVYAK LKLVPLSGCG NDDAFDYEND SVVAGGISNG  120
SDNQDKVLSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPLQNI LAKDVHGETW  180
KFRHIYRGTP RRHLLTTGWS TFVNHKKLLA GDSIVFLRAE NGDLCVGIRR AKKGIGGGHE  240
DPSGWNPAGE NYPFPWFTQN ENKMMRNINN NNSNGLNSSA NMTGRTKVRP ESVLEAVTLA  300
ANKQPFEVVY YPRASTPEFC VKAPLVEAAM QIRWCSGIRF KMAFETEDSS RISWFMGIVS  360
AVQFVDPLLW PNSPWRLLQV KWDEPDLLQN VRRVNPWLVE LVANIPSINL SPFSQPRKKL  420
RLSQHPDFPL DGQISMPPTF PSNLLDPNNL FGRLPESTPA GMQGARHAHY GRPISDFHLS  480
KVQSGLFSAG FLPFDHAATP HSVSNNLMLQ KSSVSENVSC LLSMASSNQS STKFNDEKKP  540
QLVLFGQKIL TEQQISLSTS GDTDTVSPVL TRNHLPDGNA EKMSNISQSY QWYKDNRRET  600
EASLETDHCK VFMESEDVGR TIDLSSLGSY DELYRKLADM FGIEKHEKVN RVLYRDISGA  660
VKHIGDEPFS NFTRTARRLT IRMDSSSHNG AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-762040051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497510.10.0auxin response factor 18
RefseqXP_027189702.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S2Y0V80.0A0A1S2Y0V8_CICAR; Auxin response factor
STRINGXP_004497510.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]