PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497415.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 297aa    MW: 31869.9 Da    PI: 8.0876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11231276655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  XP_004497415.1 231 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 276
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14228291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-11229280No hitNo description
Gene3DG3DSA:4.10.280.102.8E-13230288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MYRPPSSSAS SSSSSSQQQT SSLTRYGSAP GSLLTTTVDA VIASGGSRLF PPGTGHYFSG  60
DSTQQRSSSS SYDAFDGSAL LRQKSSPAGF LNHLAAHNHN AGFTITRGDG GQGQECLSRI  120
SENGPPSSYA ATAANNGGLH HSTWGADNSN NNSNSIVFSS NNKRSRNDNN NNNDDEDPDL  180
LLHCLNALET QYSLPQTSLE MASVDKLLHI PQDSVPCKIR AKRGCATHPR SIAERERRTR  240
ISGKLKKLQD LVPNMDKQTS YSDMLDLAVQ HIKGLQTQVQ KLHGELENCS CGCKPST
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497415.10.0transcription factor bHLH128-like
SwissprotQ8H1027e-62BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S2Y1U30.0A0A1S2Y1U3_CICAR; transcription factor bHLH128-like
STRINGXP_004497414.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]