PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 298aa MW: 31744 Da PI: 9.7625 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.4 | 1.4e-09 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_004497409.1 102 KTRLCNKFNTAEGCKFGDKCHFAHGE 127 8***********************96 PP | |||||||
2 | zf-CCCH | 32.8 | 1.2e-10 | 265 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +G++C+FaHg XP_004497409.1 265 FKTKLCENFTK-GSCTFGEKCHFAHG 289 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.676 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 34 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-7 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.8 | 41 | 58 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-8 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.206 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0074 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.4E-15 | 161 | 244 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.0E-11 | 171 | 241 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.068 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.5E-15 | 172 | 242 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.8E-11 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.99E-13 | 174 | 237 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-16 | 261 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-9 | 264 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-7 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.755 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-8 | 265 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDRKRGRPEG SFNGNGGAKR GRIETESFQS GLGSKLKPCT KFFSTSGCPF GEGCHFLHYV 60 PGGFKAVSQM INVGSNPAIP PIGRNPNVPP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK 120 CHFAHGEWEL GRPTVPAYED TRAMGQMQSS RVGGRIEPSH PPHGPAVSFG ASATAKISIN 180 ASLVGAIIGK NGVNSKQICR ITGVKLSIRE HDSDPNLKNI ELEGSFDQIK QASAMVHDLI 240 LNVSSVSGPP GKKISSHSSA PANNFKTKLC ENFTKGSCTF GEKCHFAHGI DELRKPGI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497409.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497409.1 | 0.0 | zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q7F8R0 | 1e-116 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S2Y1T7 | 0.0 | A0A1S2Y1T7_CICAR; zinc finger CCCH domain-containing protein 44-like | ||||
STRING | XP_004497409.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-56 | C3H family protein |