PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497172.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 309aa MW: 34467.3 Da PI: 7.9888

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.6	1.2e-32	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a++ LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_004497172.1 20 PRLRWTPELHRCFVNAIHTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-31	16	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.184	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-15	18	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-24	20	73	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-9	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSNSCGREGA VRQYVRSKVP RLRWTPELHR CFVNAIHTLG GHHKATPKLV LQLMDVKGLT 60 ISHVKSHLQM YRSMRGELGR QGRTSSQQRN QCHEENDDGC VDEVNVEQSC SKLMRRESDS 120 LIGQSNNFTK RGRIERRSCS EQQCSNRICD EAVTNPYCFY DYVQQQPNTM DDQNKGVSHT 180 PISTTYPPLL SHFAKNITSF KSHNQDSDFP QATNVNDRNT PSGAINGLRK TDTAHVEVEG 240 VGGYELSLSL TLQNPSPQTS NASNSASGIS ETISCCPNPD GFSSYKDCYR TSTVKERINL 300 DLSLAICGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497172.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497172.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_027189230.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_027189231.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_027189232.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A1S2Y036	0.0	A0A1S2Y036_CICAR; putative Myb family transcription factor At1g14600 isoform X1
STRING	XP_004497172.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-33	G2-like family protein