PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497164.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 546aa    MW: 57771.3 Da    PI: 9.4621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-057294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_004497164.1 72 FICEVCNKGFQREQNLQLHRRGH 94
                    89*******************88 PP
2zf-C2H2120.00065148170123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_004497164.1 148 WKCDKCSKKYAVQSDWKAHSKTC 170
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.76E-77194No hitNo description
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
PfamPF121712.6E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355130113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.76E-7143168No hitNo description
SMARTSM00355150148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAASSSSASL FGFRGEEESN QMKQQHSLPP SSSIATPAAP SQKKKRNQPG TPNPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKSTKEPKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QEGPRQAPIT LSGSSIGSHL YGAGGNSGTN NSIMGLNLSH  240
HVPQQISNIQ QDHTNSPTEL LRLGGNATAN RTGQFDHHIL PTSFRPNSFF HPEQNQNYVP  300
DPTNNLFNIP FLNNNNNNST NNNNNTNSGS NSFSEQLNMN HEGTNFFSGS GTSSAPSLFS  360
TCLQQGGGSS GISHMSATAL LQKAAQMGAT SSNGNGTATS LLKSFGNTTS NNSSSGGGGG  420
SGNYGGFGVG GGNEQQNSNL QDLMNCFAVG GGGGGGNSNS IFDGIGGSCS ERQLTRDFLG  480
VGGQIVRSMS GRDHHHHHHH QHAPAAFSNM PSMENNAAAP SSFGGGGGRG GAGASAGAAG  540
GGGNFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36144210369Zinc finger protein JACKDAW
5b3h_F5e-36144210369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604541e-167AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497164.10.0protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ9ZUL31e-133IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1S2Y1U80.0A0A1S2Y1U8_CICAR; protein indeterminate-domain 5, chloroplastic isoform X1
STRINGXP_004497164.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-103indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]