PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27314.2 Da PI: 6.6098 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.9e-08 | 23 | 66 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT + d+l+ +a + + +W++Ia+ ++ g+++ ++++++ XP_004497135.1 23 QWTRDHDKLFERALLIVPEDlpdRWEKIAEQVP-GKSAAEVRDHY 66 6*****************99*************.**********9 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.3e-14 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky XP_004497135.1 126 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 170 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.103 | 19 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-5 | 20 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-11 | 22 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.1E-7 | 23 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 23 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.92E-6 | 24 | 70 | No hit | No description |
PROSITE profile | PS51294 | 20.947 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.11E-17 | 121 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 122 | 174 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-11 | 123 | 173 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 123 | 169 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-12 | 126 | 170 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.44E-9 | 126 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MFRDTLAMAA AAATTRWPNQ PSQWTRDHDK LFERALLIVP EDLPDRWEKI AEQVPGKSAA 60 EVRDHYEALV HDVLEIDSGR VEVPSYSDDS AASGGGGGLS DWDSSNQISF GSKSRHGDNE 120 RKKGTPWTEE EHRLFLIGLS KFGKGDWRSI SRNVVVTRTP TQVASHAQKY FLRQNSVKKE 180 RKRSSIHDIT SVDSNSAPMP IDQNWVPPPG GSIQQSQEMH NYPSNNLQDH MGTFGYSNYG 240 FQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-14 | 13 | 86 | 2 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497135.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235008 | 1e-128 | AC235008.3 Medicago truncatula clone mth2-151p16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497135.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-60 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S2Y164 | 0.0 | A0A1S2Y164_CICAR; transcription factor SRM1 | ||||
STRING | XP_004497135.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-82 | MYB family protein |
Publications ? help Back to Top | |||
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