PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | CO-like | ||||||||
Protein Properties | Length: 445aa MW: 49599.3 Da PI: 5.885 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.5 | 1.5e-09 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ k+++++C ++ +lC+ C ++ H+ H++v XP_004497095.1 14 ARACDNCITKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 57 578*****************************657788888876 PP | |||||||
2 | CCT | 68 | 2.6e-23 | 391 | 434 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_004497095.1 391 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 434 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.921 | 12 | 59 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.9E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.0E-8 | 14 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.42E-10 | 15 | 59 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 391 | 433 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.5E-18 | 391 | 433 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MTKNVANAVG GKTARACDNC ITKRARWYCA ADDAFLCQAC DSSVHSANSL ARRHERVRLK 60 TASYKSTGSG SGSGEFINCG PSWHHGFTKK ARTPRHGKQY SASTTLQTTK SSSPGRKNYN 120 PFHLVPEMGF DEVNSISHED NEAQLLYRVP IFDPFVVELC TSPRSEGGPG AVVVTSAFAS 180 DVNTSENKVQ LGGDSNYEME NFHGILPSDI ELAEFAADVE SLLGRGLENE CIGMEELGLV 240 DTKREVYSEG KVKVEDEESH EVVVLEGYKI EGDNIEMGKE SSFELNFDYD DSNETSEEVK 300 EKVELEIGKC GEQNENNNNK GKRKISLQLD YDAVIIAWDG RKCPWTTGDK PNLDADETWP 360 DCTGSCGTEV LYPYGELGGY ECHPVMADGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA 420 EKRPRMKGRF VKRASFAVPT FPLLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 401 | 417 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497095.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-48 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497095.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A1S2XZU8 | 0.0 | A0A1S2XZU8_CICAR; zinc finger protein CONSTANS-LIKE 16 | ||||
STRING | XP_004497095.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-99 | B-box type zinc finger protein with CCT domain |