PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497077.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 314aa    MW: 35848 Da    PI: 7.071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W+  a+  g++Rt+k+c++rw++yl
   XP_004497077.1 29 RGPWTLEEDSLLIHYIAHHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 76
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_004497077.1  82 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 125
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2982476IPR017930Myb domain
SuperFamilySSF466896.36E-3127123IPR009057Homeodomain-like
SMARTSM007173.6E-152878IPR001005SANT/Myb domain
PfamPF002493.2E-162976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-233083IPR009057Homeodomain-like
CDDcd001671.23E-113176No hitNo description
PROSITE profilePS5129425.75177131IPR017930Myb domain
SMARTSM007172.7E-1581129IPR001005SANT/Myb domain
PfamPF002491.1E-1582125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2384130IPR009057Homeodomain-like
CDDcd001671.63E-1186125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNSTRTLAMS TSTKREFGSN KIEENELRRG PWTLEEDSLL IHYIAHHGEG RWNMLAKSAG  60
LKRTGKSCRL RWLNYLKPDI KRGNLTPQEQ LLILELHSKW GNRWSKIAQH LPGRTDNEIK  120
NYWRTRVQKQ ARQLNIESGS KRFIDAVKCF WMPRLLQKME QNTSPSSHHH SSITTNMNFV  180
NSIEASTSSM STTSFNVPSM SPSSSHPQSG LFIDSSSSEN HLSNPSLDFF QFSQPLEISE  240
NSSAPNVLDN TVYSCPIQNN YNIDDTNNYG LEGLNFDPLS SMETYDFSQF DFQSGGSGWM  300
LDNMANTLWN MDAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25261311105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-252613124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1540895e-91AC154089.20 Medicago truncatula clone mth2-91j8, complete sequence.
GenBankAC1651355e-91AC165135.29 Medicago truncatula clone mth2-20f2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497077.10.0transcription factor MYB62-like
TrEMBLA0A1S2XZP80.0A0A1S2XZP8_CICAR; transcription factor MYB62-like
STRINGXP_004497077.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-87myb domain protein 62